2A). Based on the consensus sequence and the integration site information that we obtained from the ACH-2 cells, we generated a custom genome for this cell line, in which the HIV-1 sequence and the 5-bp repeat were inserted in the integration site. Next, we performed the mapping step ...
DNA Sequence Assembler is the only tool that fully automates the assembly process: Automatically detect and trim low quality regions of your samples Automatically trim vector/primer sequences Automatically correct the ambiguities in your contig Automatically save the contig to disk With DNA Sequence Ass...
DNA sequences can be categorized into three groups according to their recurrence frequency16, as shown in Fig.1(a). The first group is composed of high-frequency repeats, also known as satellite DNA sequences (satDNAs), which are found in various regions of the chromosomes, including pericent...
III.4TOOLBARSIII-2 III.5TYPESIII-4 CHAPTERIVSEQUENCEANDTEXTFILESIV-1 IV.1CHARACTERSINSEQUENCEIV-1 IV.2CHARACTERSINPROTEINSEQUENCEIV-1 IV.3ORIGINFORMATIV-1 IV.4ANNOTATIONSIV-2 IV.5EDITINGIV-4 IV.6FORMATTINGSEQUENCEIV-5 IV.7SEQUENCEINPUTFROMKEYBOARDIV-5 IV.8EXPORTINGDATAIV-6 IV.9PRINTINGIV...
ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a consensus sequence. - pughlab/ConsensusCruncher
tool would be a transparent component in a bioinformatics pipeline, simply taking sequence data in any of the standard formats and producing a higher quality version of the same data containing far fewer errors. It should not only be able to correct all of the types of errors found in real ...
We developed a web-based tool that applies a number of popular algorithms to a single array CGH profile entered by the user. It generates a heatmap panel of the segmented profiles for each method as well as a consensus profile. The clickable heatmap can be moved along the chromosome and ...
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files Of the different bioinformatic methods used to recover transposable elements (TEs) in genome sequences, one of the most commonly used procedures is the homology-based method proposed by the RepeatMasker pr...
The fabricated aptasensor for DENV detection suggested its potential as a promising tool for miniaturization and point-of-care devices. Mills et al. developed a platform for the detection of two different DNA sequences using a single electrochemical sensor [90]. The sensor consisted of a universal...
DNA Baser Sequence Assembler Fully functional trial This trial version isfullyfunctional except the saving the contig to disk (the contig is saved, but advertisement is inserted over its bases). When the trial period ends, you can still use DNA Baser Assembler to: ...