We introduce an equivariant diffusion-based generative model that learns the joint distribution of ligand and protein conformations conditioned on the molecular graph of a ligand and the sequence representation of a protein extracted from a pre-trained protein language model. Benchmark results show that...
Diffusion generative network modelGene regulatory network generationbreast cancer biomarkersnon-Euclidean graph embeddingA gene regulatory network (GRN) intricately encodes the interconnectedness of identities and functionalities of genes withincells, ultimately shaping cellular specificity. Despite decades of ...
Permutation Invariant Graph Generation via Score-Based Generative Modeling Chenhao Niu, Yang Song, Jiaming Song, Shengjia Zhao, Aditya Grover, Stefano Ermon AISTATS 2021. [Paper] [Github] 2 Mar 2020 Releases No releases published Packages No packages published...
Existing data poisoning methods for QoS-aware cloud API recommender systems have evolved from traditional heuristic-based approaches to generative adversarial network based methods. Although this evolution has improved attack performance, it remains challenging to strike an effective balance between attack ...
Permutation invariant graph generation via score-based generative modeling. In Proceedings of the International Conference on Artificial Intelligence and Statistics, PMLR, Virtual, 26–28 August 2020; pp. 4474–4484. [Google Scholar] Ho, J.; Jain, A.; Abbeel, P. Denoising diffusion probabilistic ...
leveraging the score-based generative diffusion model, we introduce a novel unsupervised inversion methodology tailored for solving inverse problems arising from PDEs. Our approach operates within the Bayesian inversion framework, treating the task of solving the posterior distribution as a conditional genera...
Structure-based generative chemistry is essential in computer-aided drug discovery by exploring a vast chemical space to design ligands with high binding affinity for targets. However, traditional in silico methods are limited by computational inefficien
2.3. Diffusion models The diffusion model is a state-of-the-art generative model (Ho, Jain, and Abbeel 2020; Sohl-Dick stein et al. 2015). It employs a Markov chain diffusion process to gradually add noise and destroy the data structure. Then, it learns the transitions of that ...
The generative model should transform the shape, size or pose automatically to fit the source image. In the last column of Figure 4, our method achieves a photo-realistic result while being similar to the reference. Table 1. Quantitative comparison of different me...
Methods YOLOv8n-cls was used to construct a baseline model on the data of 3781 patients from the Orthopedic Trauma Center of Wuhan Union Hospital. Additionally, a segmentation-guided classification approach was proposed. To enhance the dataset, a diffusion model was further demonstrated for data au...