HiC-DC+ enables systematic analysis of Hi-C and HiChIP data HiC-DC+ estimates significant interactions in a Hi-C or HiChIP experiment directly from the raw contact matrix for each chromosome up to a specified genomic distance, binned by uniform genomic intervals or restriction enzyme (RE) fragme...
Conclusion: This study demonstrates that the cheese matrix modulates the impact of dairy fat on postprandial lipemia in healthy subjects. This trial was registered at clinicaltrials.gov as NCT02623790.The American Journal of Clinical Nutrition
Sign in to download hi-res image Fig. 20. DSC thermograms of (a) pure SEO (b) matrix and (c) SEO loaded microcapsule. Reprinted from Mehran et al. (2020) with permission from Elsevier. View article Biophysical screening and characterisation in medicinal chemistry Matilda Bingham,...
RHiCDB is an open-source R package based on HiCDB methods that detects the contact domain boundaries (CDBs) from Hi-C contact matrix. RHiCDB function takes raw or normalized contact matrix and outputs consistency annotated CDBs or differential CDBs. visHiCDB function takes raw or norma...
The solution procedure is usually to convert PDEs to ODEs and then solved to obtain exact analytical solutions where possible, or a system of algebraic equations A=x¯=B¯ where A= is a matrix, x¯ is the vector being solved, and B¯ is a known “force” vector. The solution is...
(purple shading), respectively. Hi-C contact heatmaps display the raw counts in 5 kb windows. H3K9me3, CTCF, SMC3, H3K27ac, and 5hmC tracks are displayed as input subtracted RPKM values. ATAC-seq tracks are displayed as normalized read counts. WGBS datasets are shown as mCG/CG ...
Filtering reads down to valid cis interaction pairs, we took the raw 5-Kb resolution contact maps (the “.matrix” and corresponding “.bed” file output from process “build_contact_maps”) as input to our differential activity-by-contact pipeline. Differential activity-by-contact Candidate ...
is a bin-specific intercept, x is the design matrix including the indicator of the groups of interest x 0 and covariates x j ( j = 1, …, k ), β represent associated coefficients, and e i is a random effect following a log gamma distribution with a scale parameter ψ ...
Sign in to download hi-res image Fig. 3. The CV and EVLS of d(GCGAAGC) on mercury electrodes. A: The cyclic voltammogram of the heptamer. The schema: the reduction and the oxidation of the G moieties; the red and the blue arrows indicate the reduction of the A + C and G moietie...
(2014), proposed a covariance matrix learning based differential evolution algorithm. This algorithm is balancing the exploration and exploitation abilities of DE. In this paper, a new variant of DE has been presented which is based on the homeostasis adaption process. In proposed algorithm the ...