Gene (BC0784) encoding for the spore germination protein, gerA operon was up-regulated with a log2-transformed fold change value of 1.2 due to heat activation in the presence of L-alanine. The GerA operon located in the inner membrane is known to be involved in the uptake of L-alanine ...
Differentialgeneexpression:Whichgenesaredifferentiallyexpressedinthetwotissuetypepopulations?Acostefficient(cheap)experiment:Weobserveagenewithatwo-fold higherexpressioninprofileAthan A inprofileB.Istwo-foldtrustworthy?B Well,byhowmuchcanthisgene changeingroupAandingroupB?Bynomorethan10%thanthe answerisyes,by...
The radius at which a gene is plotted represents log2 of the fold change between the high and low values among three rice cultivars, and the angle represents the relationships between LYP9 and its parents. Differential expressed genes with significance intervals of 0.01 <P < 0.05 and P < ...
To optimise this metric, we repeated over a range of adjusted p and log2fold change cut-offs and selected the combination with the greatest correlation with patient age. For full details see the Supplementary Information. Results Quality control and identification of confounding variables The NIMA ...
Gene (BC0784) encoding for the spore germination protein, gerA operon was up-regulated with a log(2) -transformed fold change value of 1.2 due to heat activation in the presence of L-alanine. The GerA operon located in the inner membrane is known to be involved in the uptake of L-...
We agree with the view that in microarray experiments a significant differential gene expression should be recorded only for genes with an appropriate fold change and adjusted p-value as a cutoff. During the first approach, we have ... W Garczorz,M Kimsa-Furdzik,T Francuz,... - 《Scandin...
# Pre-filter features that have less than a two-fold change between the average expression of # CD14+ Monocytes vs FCGR3A+ Monocytes head(FindMarkers(pbmc, ident.1 = "CD14+ Mono", ident.2 = "FCGR3A+ Mono", logfc.threshold = log(2))) ...
r In a moderated t–statistic, the estimated gene–specific variance s 2 g is replaced by a weighted average of s 2 g and s 2 0 , which is a global variance estimator obtained from pooling all genes. r This gives an interpolation between the t–test and a fold–change criterion. ...
Empty CellNumber of differentially expressed genes (log2 fold change >2, at p < 0.01) Compared growth conditions upregulated downregulated birch vs. control 420 367 ash vs. control 828 648 maple vs. control 405 370 ash vs. birch 442 385 maple vs. birch 27 22 maple vs. ash 377 389...
GENENAME: Gene name column; ENTREZID: ENTREZ Gene identifier column; logFC: Log2 fold-change column; AveExpr: Average expression (A-value) column; t: moderated t-statistics column; P.Value: P-value column; adj.P.Val: adjusted P-value column; ...