3_ ggplot2 About ggplot2 is a plotting system for R, based on the grammar of graphics, which tries to take the good parts of base and lattice graphics and none of the bad parts. It takes care of many of the fiddly details that make plotting a hassle (like drawing legends) as well ...
2 ggplot2 6687 2086 R 53 An implementation of the Grammar of Graphics in R 2025-05-22T07:57:14Z 3 awesome-R 6164 1502 R 3 A curated list of awesome R packages, frameworks and software. 2024-12-06T02:57:12Z 4 shiny 5480 1876 R 826 Easy interactive web applications with R 2025-05...
charts displaying the fraction of cells in six cell death states in healthy controls and different post-trauma time point trauma patients.fThe line graphs illustrate variations in the percentage of NK cells with different death paradigms at various post-trauma time points. Colors distinguish between ...
in Methods) from preterm infants with a birthweight <1500 g. Samples were collected every other day, starting with the meconium, up until two weeks of age. The study groups do
(I purposely used the default settings in R with only minor modifications here to demonstrate what happens if you just want to plot the data with minimal effort.) Let’s compare the two graphs: From astatistical graphicsperspective, the second graph dominates. The countries are directly comparab...
(red). The graphs were created in R using the package ggplot2. The x-axis shows the genomic position in Mbp for every chromosome. The y-axis shows the mean allele frequency. The R package WindowScanR was used to calculate frequency means for local windows of the size of 1e6bp. (E)...
General manipulation and basic analyses of the dataset were performed in R71with the phyloseq, dplyr, tidyr, and ggplot2 R packages66. High-throughput compute cluster job submission was performed with the batchtools72R package. Phylogenies were manipulated with the ape73and caper74R packages and ...
Data visualization was performed using several R packages such as dplyr (35), ggplot2 (36), KEGGREST (37), LIMMA (33) pheatmap (38), and VennDiagram (39). Figure 1 and Supplemental Figs. S1 and S2 were created using Jvenn (40), while violin plots were prepared by SRplot (34). ...
3_ ggplot2 About ggplot2 is a plotting system for R, based on the grammar of graphics, which tries to take the good parts of base and lattice graphics and none of the bad parts. It takes care of many of the fiddly details that make plotting a hassle (like drawing legends) as well ...
ggplot2 v3.0.0 DrImpute v1.1 FactoMineR v1.41 Rtsne v0.13 plotly v4.8.0 Other Trim Galore! v0.5.0 salmon v0.11.3 GNU parallel 20141022 In development https://github.com/ppapasaikas/griph https://github.com/galanisl/FunEnrich RNA-seq data We integrated bulk and single-cell RNA-seq...