Topologically associating domains (TADs) are critical structural units in three-dimensional genome organization of mammalian genome. Dynamic reorganizations of TADs between health and disease states are associated with essential genome functions. However
Malware Classification Method via Binary Content Comparison RACS 2012 link Binary function clustering using semantic hashes ICMLA 2012 link Value-based program characterization and its application to software plagiarism detection 2011 link CMCD: Count Matrix Based Code Clone Detection 2011 link Increme...
Additionally, we propose an expectation maximization scheme such that classification labels are updated between DiffNet training epochs. This self-supervision provides an automated way to deal with the fact that we know the biochemical properties of variants (i.e., their entire structural ensemble), ...
These ideas are implemented in diffTF to globally assess differential TF activity between two conditions (basic mode; Figure 1A; Figure S1A) and to classify TFs into activators and repressors (classification mode; Figure 1B). Basic mode is based on genome-wide accessibility or ChIP-seq (of ...
the software converts EST frequencies into EST Coverage Ratios of GO Terms. The ratios are then tested for statistical significances to uncover differentially represented GO terms between the compared transcriptomes, and functional differences are thus inferred. We demonstrated the validity and the utilit...