Tutorial This is a simple tutorial which covers the generation of a spectral library from gas-phase fractionated DIA data and its use to analyse other DIA runs (using DIA-NN 1.7.5). Download all the files from https://osf.io/w5dr6/files/?view_only=00c8a68bfb824835b7fa304e31922ffa - ...
200Altmetric Metrics Abstract We present an easy-to-use integrated software suite, DIA-NN, that exploits deep neural networks and new quantification and signal correction strategies for the processing of data-independent acquisition (DIA) proteomics experiments. DIA-NN improves the identification and qua...
et al. Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial. Mol. Syst. Biol. 14, e8126 (2018). Article Google Scholar Muntel, J. et al. Surpassing 10000 identified and quantified proteins in a single run by optimizing current LC-MS instrumentation and data ...
Guo Ci Teo, George Rosenberger, Agathe Niewienda, Daniela Ludwig, Jens Decker, Stephanie Kaspar-Schoenefeld, Kathryn S. Lilley, Michael Mülleder, Alexey I. Nesvizhskii& Markus Ralser Nature Communications13, Article number:3944(2022)Cite this article ...