To select sOTUs for the Microbial Influence Networks (MINs), we used GLMM results to choose tumor and normal-associated microbes in dMMR and pMMR samples with a linear effect size greater than 0.25, regardless of statistical significance. Effect size captures biological impact potential while signifi...
The least squared mean of conventional corn yield was 6660 kg ha−1 whereas that for organic corn was 4610 kg ha−1, representing a 31% reduction with organic management. This yield reduction in organic compared to conventional corn at FSP is higher than average yield reductions that ...
Current inflammatory bowel disease (IBD) therapies are ineffective in a high proportion of patients. Combining bulk and single-cell transcriptomics, quantitative histopathology and in situ localization across three cohorts of patients with IBD (total n = 376), we identify coexpressed gene modules...