Models repository: https://github.com/mdmparis/defense-finder-models. Options: --models-dir TEXT Specify a directory containing your models. --help Show this message and exit. Running Defense Finder Quick run If you want to run DefenseFinder on a small set of genomes (< 30 000 proteins)....
master .github defense_finder defense_finder_cli defense_finder_posttreat defense_finder_updater tests .gitignore CONTRIBUTING.md LICENSE List_system_article.md README.md df_test_nt_defense_finder_genes.tsv pyproject.toml pyvenv.cfg requirements-dev.txt requirements.txt setup.py Breadcrumbs defense-...
@@ -20,9 +20,9 @@ A [Github action](https://github.com/mdmparis/defense-finder/actions) is setup t Note that you don't need to publish defense-finder everytime the models change: only changes in this repository are relevant. Here are the steps to follow in order to publish defense...
The DefenseFinder models based on MacSyFinder architecture can be [here](https://github.com/mdmparis/defense-finder-models). The CRISPR-Cas models used in DefenseFinder come from the macsy models of CasFinder available [here](https://github.com/macsy-models/CasFinder). ## DefenseFinder web...
If not already present in the meta.yaml, make sure to specifyrun_exports(seeherefor the rationale and comprehensive explanation). Add arun_exportssection like this: build:run_exports: -... with...being one of: while replacing"myrecipe"with eithernameif aname|lowervariable is defined in your...
Releases 2 find_prokaryotic_immune_systems v0.2.0 Latest May 20, 2024 + 1 release Packages No packages published Languages Python 100.0% Footer © 2024 GitHub, Inc. Footer navigation Terms Privacy Security Status Docs Contact Manage cookies Do not share my personal information ...
[OPTIONS] Fetches the latest defense finder models. The models will be downloaded from mdmparis repositories and installed on macsydata. This will make them available to macsyfinder and ultimately to defense- finder. Models repository: https://github.com/mdmparis/defense-finder-models. Options: ...
2 changes: 1 addition & 1 deletion 2 defense_finder_cli/_version.py Original file line numberDiff line numberDiff line change @@ -1 +1 @@ __version__ = "1.2.2" __version__ = "1.3.0" 0 comments on commit d80d9e9 Please sign in to comment. Footer...