computeMatrix reference-point -S N3_IgG_1_CKDL220009620-1a_HN2WFDSX3_L1_1_val_1.bowtie2.10x30.bw AD3_IgG_1_CKDL220009612-1a_HN37TDSX3_L1_1_val_1.bowtie2.10x30.bw N3_SOX9_1_CKDL220009618-1a_HN37TDSX3_L4_1_val_1.bowtie2.10x30.bw AD3_SOX9_1_CKDL220009614-1a_HN37TDSX3_L4_...
decrease the bin size when generating the matrix using :doc:`computeMatrix <tools/computeMatrix>` In Galaxy: go to "advanced options" --> "Length, in base pairs, of the non-overlapping :ref:`bin <terminology>` for averaging the score over the regions length" --> define a smaller value,...
(#813) * oops * fix testing and set a max number of filtered reads * apparently a bunch of things were getting skipped * fix wrappers * update computeMatrix wrapper * Decrease memory needs (#817) * Use an iterator to not blow memory up * Update a bit more * The GC bias stuff is ...
computeMatrix reference-point -S N3_IgG_1_CKDL220009620-1a_HN2WFDSX3_L1_1_val_1.bowtie2.10x30.bw AD3_IgG_1_CKDL220009612-1a_HN37TDSX3_L1_1_val_1.bowtie2.10x30.bw N3_SOX9_1_CKDL220009618-1a_HN37TDSX3_L4_1_val_1.bowtie2.10x30.bw AD3_SOX9_1_CKDL220009614-1a_HN37TDSX3_L4_...
computeMatrixOperations.rst correctGCBias.rst multiBamSummary.rst multiBigwigSummary.rst plotCorrelation.rst plotCoverage.rst plotEnrichment.rst plotFingerprint.rst plotHeatmap.rst plotPCA.rst plotProfile.rst about.rst advanced_features.rst api.rst changelog.rst example_api_tutorial.rst example_gallery.rs...
computeMatrixOperations.rst correctGCBias.rst estimateReadFiltering.rst multiBamSummary.rst multiBigwigSummary.rst plotCorrelation.rst plotCoverage.rst plotEnrichment.rst plotFingerprint.rst plotHeatmap.rst plotPCA.rst plotProfile.rst about.rst advanced_features.rst api.rst changelog.rst example_api_tutori...
computeMatrix.rst correctGCBias.rst multiBamSummary.rst multiBigwigSummary.rst plotCorrelation.rst plotCoverage.rst plotFingerprint.rst plotHeatmap.rst plotPCA.rst plotProfile.rst about.rst advanced_features.rst api.rst changelog.rst example_api_tutorial.rst example_gallery.rst example_step_by_step.rs...
computeMatrix.rst correctGCBias.rst multiBamSummary.rst multiBigwigSummary.rst plotCorrelation.rst plotCoverage.rst plotFingerprint.rst plotHeatmap.rst plotPCA.rst plotProfile.rst about.rst api.rst changelog.rst example_api_tutorial.rst example_gallery.rst example_step_by_step.rst example_usage.rst ...
computeMatrix.rst correctGCBias.rst multiBamSummary.rst multiBigwigSummary.rst plotCorrelation.rst plotCoverage.rst plotFingerprint.rst plotHeatmap.rst plotPCA.rst plotProfile.rst about.rst api.rst changelog.rst example_api_tutorial.rst example_gallery.rst example_step_by_step.rst example_usage.rst ...
In such cases, the --unscaled5prime and --unscaled3prime options in computeMatrix can be used. These will prevent regions at one or both end of transcripts (or other regions) to not be excluded from scaling, thereby allowing raw signal profiles to be compared across transcripts. An example ...