Wikipedia (2007) De novo protein structure prediction, http://en.wikipedia.org/wiki/De_novo_protein_structure_prediction, July.Hung L-H, Ngan S-C, Samudrala R. De novo protein structure pre- diction. In: Xu Y, Xu D, Liang J, editors. Computational methods for protein structure prediction...
在骨架采样中,首先将局部序列中的可能结构作为局部结构的子集,构建离散优化问题;然后使用准牛顿最小化(quasi-Newton minimization)等连续优化方法调整蛋白质结构(此时主要调整的是静电相互作用和氢键对蛋白质结构的影响)。 蛋白质结构预测(Protein-structure prediction) 蛋白质的结构预测:指在不知道相关进化蛋白结构信息的...
Proteins: Structure, Function, and Bioinformatics Volume 62, Issue 2, pages 381–398, 1 February 2006 Additional Information How to Cite Fujitsuka, Y., Chikenji, G. and Takada, S. (2006), SimFold energy function for de novo protein structure prediction: Consensus with Rosetta. Proteins, 62...
Predicting the structures of proteins from amino acid sequences is of great importance. Recently, the accuracy of de novo protein structure prediction has been substantially improved when assisted by information about the contact between residues, which
Simfold energy function for de novo protein structure prediction: consensus with rosetta. Proteins: Structure, Function, and Bioin- formatics, 62(2):381... Y Fujitsuka,G Chikenji,S Takada - Wiley Subscription Services, Inc., A Wiley Company 被引量: 0发表: 2005年 Constitutive and β-Naph...
Building a better fragment library for de novo protein structure prediction.doi:10.1371/journal.pone.0123998Fragment-based approaches are the current standard for de novo protein structure prediction. These approaches rely on accurate and reliable fragment libraries to generate good structural models. In ...
Protein structure prediction can be considered as a multimodal optimization problem for sampling the protein conformational space associated with an extremely complex energy landscape. To address this problem, a conformational space sampling method using multi-subpopulation differential evolution, MDE, is prop...
Liu, Y., Wang, S., Dong, J.et al.De novo protein design with a denoising diffusion network independent of pretrained structure prediction models.Nat Methods21, 2107–2116 (2024). https://doi.org/10.1038/s41592-024-02437-w Download citation ...
protein structure prediction that can be explored in the context of the predicted association network for theHalobacterium NRC-1. The information is derived using Rosettade novostructure prediction as part of a combined annotation pipeline that also includes several primary-sequence similarity based ...
A new de novo protein structure prediction method for transmembrane proteins (FILM3) is described that is able to accurately predict the structures of larg... T Nugent,DT Jones - 《Proceedings of the National Academy of Sciences of the United States of America》 被引量: 231发表: 2012年 Auto...