This deletion is significantly associated with lower systolic pulmonary arterial pressure, one of the key adaptive physiological traits in Tibetans. Moreover, with the use of the high quality de novo assembly, we observed a much higher rate of genome-wide archaic hominid (Altai Neanderthal and ...
(2013). Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria. MBio 4: e00569-12. Hess M, Sczyrba A, Egan R, Kim T-W, Chokhawala H, Schroth G et al. (2011). Metagenomic discovery of biomass-degrading genes and genomes from cow rumen....
However, to date, there is still no genome assembly information publicly available for bar-headed geese. Methods In this study, we present the first de novo whole genome sequencing and assembly of the bar-headed goose, along with gene prediction and annotation. Results 10X Genomics sequencing ...
Forde novogenome assembly, Platanus software was used for constructing contigs and scaffolds with default parameters, and GapCloser was employed to fill the remaining gaps in the scaffolds with all sequencing reads. These steps finally yielded a wild yak draft genome with a total length of 2.83...
Genome size estimation Genome assembly, scaffolding and gap-closing Linkage map construction using the TM-1 × Hai7124 mapping population Correction of the TM-1 assembly using the SNP map and pseudomolecule chromosome construction Assessment of genome assembly quality by PE reads ...
Moreover, with the use of the high-quality de novo assembly, we observed a much higher rate of genome-wide archaic hominid(Altai Neanderthal and Denisovan) shared non-reference sequences in ZF1(1.32%–1.53%) compared to other East Asian genomes(0.70%–0.98%),reflecting a unique genomic ...
The genome of Populus davidiana, a keystone aspen species, has been sequenced to improve our understanding of the evolutionary and functional genomics of the Populus genus. The Hi-C scaffolding genome assembly resulted in a 408.1 Mb genome with 19 pseudochromosomes. The BUSCO assessment revealed...
The complete human genome sequence is used as a reference for next-generation sequencing analyses. However, some ethnic ancestries are under-represented in the reference genome (e.g., GRCh37) due to its bias toward European and African ancestries. Here, we perform de novo assembly of three...
we performed a genome-wide transcriptome analysis onR. arenarumlarvae through massive RNA sequencing, followed byde novoassembly, annotation, and gene prediction. We obtained 57,407 well-annotated transcripts representing 99.4% of transcriptome completeness (available athttp://rhinella.uncoma.edu.ar)....
This is the first report on de novo transcriptome of Dactylorhiza hatagirea, a critically-endangered, terrestrial orchid of alpine Himalayas. The plant is acclaimed for medicinal properties but little is known about its secondary-metabolites profile or c