BioProject和BioSample档案。自该迁移,注册该BioProject和BioSample数据库已经要 求在排序和对齐读取前可提交至DRA。DRA提交系统进行了改进,允许多个实验和运行对象 作为一个制表符分隔的文本文件提交。 2.3日本基因型与表型档案 JGA是人类个体的基因型与表型数据的永久存档服务。JGA数据收集根据授权协议进行, 其授权数据发...
BioProject Study BioSample Sample Experiment Run GSA PRJC CRA SAMC \ CRX CRR SRA PRJNA SRP SAMN SRS SRX SRR ENA PRJEB ERP SAME ERS ERX ERR DDBJ PRJDB DRP SAMD DRS DRX DRR GEO GSE \ GSM \ \ \ 其中对于来自于 GEO 数据库的两种数据格式GSE/GSM,会直接获取到与之关联的PRJNA/SAMN,然后获...
{ "data_type": "", "num_extra_references": 0, "num_extra_comments": 0, "values": {"submitter": "Robertson,G.R.; Mishima,H.", "bioproject": "PRJDB12345", ...}, "options": "" } data_type: 登録するデータの区分を示す。データ区分に応じてメタデータの定義情報が変わる (...
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In 2011, DDBJ launched two new resources: the 'DDBJ Omics Archive' (DOR; http://trace.ddbj.nig.ac.jp/dor) and BioProject (http://trace.ddbj.nig.ac.jp/bioproject). DOR is an archival database of functional genomics data generated by microarray and highly parallel new generation sequencers...
最近需要下载些公共数据,在简书上搜索到了有小伙伴介绍 iseq,测试了下效果不错,可以媲美 KingFisher,虽然还没曾正式发表(预印本),亲测效果不错,推荐。iSeq是一个 Bash 脚本,允许您从GSA[1]、SRA[2]、ENA[3]和DDBJ[4]数据库下载测序数据和元数据。
DatabasesBioProjectStudyBioSampleSampleExperimentRun GSA PRJC CRA SAMC \ CRX CRR SRA PRJNA SRP SAMN SRS SRX SRR ENA PRJEB ERP SAME ERS ERX ERR DDBJ PRJDB DRP SAMD DRS DRX DRR GEO GSE \ GSM \ \ \ Additionally, for the two data formats (GSE/GSM) from the GEO database, it will dir...
iSeq: Anintegrated tool to fetch publicSequencing data Cite us: Haoyu Chao, Zhuojin Li, Dijun Chen, Ming Chen, iSeq: An integrated tool to fetch public sequencing data,Bioinformatics, 2024;, btae641,https://doi.org/10.1093/bioinformatics/btae641 ...