A machine implemented method of data processing in a data stream pipeline is provided. The data stream pipeline is formed from multiple sources of input data, and the method comprises: receiving input data from multiple sources, the data having differing format and data rates; buffering the data...
Kelly, S. T. & Yuhara, S. (2022) HiCUP+: a fast open-source pipeline for accurately processing large scale Hi-C sequence data. Software release v1.0.3 URL:https://github.com/hugp-ri/hicup-plus/ BibTex version: @Manual{, author = {Kelly, S. Thomas and Yuhara, Satoshi}, title =...
Types of Data Pipeline 数据管道的类型 There are 2 main types of data pipelines:数据管道主要有 2 种类型: Batch processing pipeline1. 批处理流水线The batch processing pipelines processes data in batches and carries out the operation of transfering the data at regular intervals with varying execution...
Single-cell RNA-sequencing analysis to quantify the RNA molecules in individual cells has become popular, as it can obtain a large amount of information from each experiment. We introduce UniverSC ( https://github.com/minoda-lab/universc ), a universal s
BSMN common data processing pipeline implementing various SGE (Sun Grid Engine) jobs arranged for genome alignment, variant calling and filtering. Setup and installation This pipeline can be run in any cluster system using SGE job scheduler. We would recommend set your own cluster in AWS using AW...
In-flight Processing Data Pipeline runs completely in-memory. In most cases, there's no need to store intermediate results in temporary databases or files on disk. Processing data in-memory, while it moves through the pipeline, can be more than 100 times faster than storing it to disk to ...
airflow 是能进行数据pipeline的管理,甚至是可以当做更高级的cron job 来使用。现在一般的大厂都不说自己的数据处理是ETL,美其名曰 data pipeline,可能跟google倡导的有关。airbnb的airflow是用python写的,它能进行工作流的调度,提供更可靠的流程,而且它还有自带的UI(可能是跟airbnb设计主导有关)。话不多说,先...
pipelines:数据管道主要有 2 种类型：Batch processing pipeline1. 批处理流水线The batch processing ...
3. Processing Telemetry Data The next phase of the telemetry data processing pipeline occurs after data is ingested to the Kinesis Data Stream. At this point, there are two independent and parallel consumers of the stream. 3.1. Saving Telemetry Data ...
This pipeline is for BL-Hi-C.It is based on Juicer and HiC-pro which combines the advatages of these two processing pipelines. HiCpipe is much faster than Juicer and HiC-pro and can output multile features of Hi-C maps. The main.sh will trim the Linker of BL-Hi-C and map the d...