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grandRescue, part of thegedisuite from the Erhard lab, uses STAR in conjunction with some custom tooling to better recover high mutation content reads. They also make a good point intheir manuscriptthat there is nothing that stops you from doing 3-base genome alignment with STAR (and thus si...
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Classifier for metagenomic sequences. Contribute to DaehwanKimLab/centrifuge development by creating an account on GitHub.
I am running HISAT 2.0.5 and working with the Arabidopsis thaliana annotation Araport11, specifically the GTF. This file is not processed by hisat2_extract_splice_sites.py. It produces no output: $ hisat2_extract_splice_sites.py Araport1...