J Gregory Caporaso (NAU) presented QIIME 2 (https://qiime2.org) and shared his team’s QIIME 2 plugin, q2-longitudinal, which incorporates multiple methods for characterizing longitudinal and paired-sample marker gene datasets [25]. Development and application of metagenomic analysis tools is ...
# 需要导入模块: import click [as 别名]# 或者: from click importget_current_context[as 别名]defcitations(path):importqiime2.sdkimportiofromq2cli.core.configimportCONFIG ctx = click.get_current_context()try: result = qiime2.sdk.Result.load(path)exceptExceptionase: header ='There was a probl...
2,925 (average of 649; SD of ± 155) bacterial and archaeal operational taxonomic units (OTUs) based on a 97% similarity cut-off (Supplementary TableS2). The relative abundances of bacterial lineages in the SIO was high (93.1% of the total OTUs assigned), with considerably lower propo...