Characteristics of metabolic functions of gut microbiome in the calves of two clusters Metagenomic functional analysis showed the distinct features between the cluster1 and cluster2. At the KEGG level2, we observed a significant difference in metabolic functions related to amino acid, energy, vitamins...
Core microbiomeAlpha diversityBeta diversityMetabolic analysisA meta-analysis was carried out using 20 publicly available metagenomic datasets obtained from diverse wastewater samples. A taxonomic assignment was performed, and the diversity measures were calculated. A total of 6,11,942 reads were analysed...
The analysis of 16S rRNA gene fragment amplicons provided deeper insight into the indigenous enterobacterial microbiome at OTU-based taxonomic levels. After the sequences were quality-filtered and clustered into OTUs, a network was constructed that links each OTU to the respective sample (Fig. 3)....
In an era of ecosystem degradation and climate change, maximizing microbial functions in agroecosystems has become a prerequisite for the future of global agriculture. However, managing species-rich communities of plant-associated microbiomes remains a m
On the abundance table, along with the categorical infor- mation of these compartment, we have applied the core microbiome analysis [13]. This is a better suited model for inferring core microbiome as it frees one from choosing a crisp threshold (typically 50% or 85% prevalence for defin- ...
The core primarily serves investigators at the University of Arizona, but also other academic institutions and industry with interest in microbiome analysis including human microbiome and microbiome in animal models of human disease, as well as all environmental samples...
Most studies examining the commensal human oral microbiome are focused on disease or are limited in methodology. In order to diagnose and treat diseases at an early and reversible stage an in-depth definition of health is indispensible. The aim of this s
Microbiome-microbial metabolome-cancer cell interactions in breast cancer-familiar, but unexplored. Cells. 2019;8:293. Denisenko E, Guo BB, Jones M, Hou R, de Kock L, Lassmann T, Poppe D, Clement O, Simmons RK, Lister R, Forrest ARR. Systematic assessment of tissue dissociation and ...
different ciliates; some of them were enough numerous to be visualized inside the host cells with fluorescencein situhybridization. However, the abundance of different bacteria forming the microbiome of ciliates is usually low, thus making NGS analysis a much more sensitive technique to study these ...
Principal coordinate analysis (PCoA) and principal component analysis (PCA) based on binary Jaccard distance were performed to obtain principal coordinates and visualize complex, multidimensional data in R (v. 2.15.3). Microbiome similarities were identified using the analysis of similarity (ANOSIM) ...