BrodayWalker/build_container_on_shub/latest/2019-05-24-d9d6f04e-2eb9e67c C-SWARM/pgfem-3d-singularity C-SWARM/pgfem-3d-singularity C3BI-pasteur-fr/craw C3BI-pasteur-fr/craw CAIsr CAIsr CATG-UMAG CATG-UMAG CHRUdeLille CHRUdeLille CNC-UMCG CNC-UMCG CallumWalley CallumWalley CampagneLa...
Conda installation of AmpliconSuite-pipeline (which includes AA and all recommended modules). Obtain a containerized image of AmpliconSuite-pipeline (Docker or Singularity). Manual installation from GitHub source code and manual management of dependencies....
Thanks to Kilian Ilius, the container should be downloadable fromhere. To invoke it you have to have apptainer installed and use the following command: Apptainer exec -B /bind/paths ClinCNV_v1.18.3.sif clinCNV.R parameters One should also be able to use it with singularity. The only th...
Obtain a containerized image of AmpliconSuite-pipeline (Docker or Singularity). Manual installation from GitHub source code and manual management of dependencies. Option 1: Conda Follow the instructions here. Option 2: Containerized images Follow the instructions here. ...