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> Upon deposition, when I upload maps, a contour level is required but the > values from coot are not accepted, I have to provide the contour level > relative to the map value, like the one that you set in Chimera. Thus I > opened the map in Chimera and I set a contour level "...
> on F, with F set to zero for negative F^2^. The threshold expression of > > F^2^ > 2sigma(F^2^) is used only for calculating R-factors(gt) etc. and is > > not relevant to the choice of reflections for refinement. R-factors based > > on F^2^ are statistically about twi...
Chemicals Carbachol and piroxicam were purchased from Sigma- Aldrich (St. Louis, MO, USA). TTX was from Tocris Bio- science (Ellisville, MO, USA). PGE2 was from Cayman Chemical (Ann Arbor, MI, USA). The EP agonists and antagonists were a kind gift from Ono Pharmaceutical (Osaka, ...
Buccaneer, Coot, and low resolution - CCP4：海盗,傻瓜,和低分辨率CCP4 “Pirateapplications”...Pirate:phaseimprovementsoftwareBrigantine:biasremovalsoftwareUnnamedapplication KevinCowtancowtan@ysbl.york.ac.uk KevinCowtan,cowtan@ysbl.york.ac.uk Pirate Status:Statisticalphaseimprovementsoftware.IncludedinCCP4...
1Introduction We have a protein structure(which is well-refined).However,we have not yet identified the ligand position-indeed we don’t even know if the ligand is bound or not.In this tutorial,we will build a ligand and search the density for this ligand, add the ligand to main ...
and find density clusters above 1.0 sigma. Make sure that you select the correct map and protein molecule and have selected the ligand that you made with the SMILES string. Press ”Find ’Em!” What do you see!? You should see 4 hits. ...