Run blast2gff.py on the output file. This will reformat the tabular blast hits into gff3 alignment style. Simple filtering options can be applied with-e-sand-F. If the queries were from SwissProt, use the-Soption to correctly format the SwissProt fasta headers for the output. ...
# 需要导入模块: from Bio import Phylo [as 别名]# 或者: from Bio.Phylo importconvert[as 别名]defadd_trees(self, tree_file, format, tree_uri=None, bulk_loader=None, puid=False, rooted=False):'''Convert trees residing in a text file into RDF, and add them to the underlying RDF store...
Create a new text file with Notepad and copy the code from the black box below in it. Save the file as 'convert_all.cmd' and double click it to execute it. In few seconds you will have all SCF files converted to FASTA. for %%F IN (c:\samples\*.scf) DO Convertrix.exe --Input...
FluConvert: a tool to process downloaded sequences FluConvert automatically processes downloaded sequence files (*.FASTA) using the command-line interface (CLI) by batch (shell) scripts operated in a Microsoft Windows environment. It consequently performs (1) name and quality checking for downloaded...
Supports any ASCII text based genome such as FASTA, GBK, .txt, .gff etc, if it has text like GTAGCCTAGTCGATTCAG or maybe UUGCUTGUTGUTGUTGTUCUT then AminoSee can render up a set of images of it! The triplet for Lyson AAA would render to this indigo colour at 313 A node command ...
Run blast2gff.py on the output file. This will reformat the tabular blast hits into gff3 alignment style. Simple filtering options can be applied with-e-sand-F. If the queries were from SwissProt, use the-Soption to correctly format the SwissProt fasta headers for the output. ...