out of the box. However, many conversions require external tools. This is why we recommend to use acondaenvironment. In particular, most external tools are available on thebiocondachannel. For instance if you want to convert a SAM file to a BAM file you would need to installsamtoolsas ...
bam bcf bed bigwig bplink clustal cram csv embl fasta fastq genbank gfa gff maf newick nexus phylip phyloxml plink sam scf sra stockholm tsv twobit vcf wig xls xmfa https://github.com/bioconvert/bioconvert