Files main .gitignore LICENSE README.md analysis.haplotype.py analysis.merge.py dedup_UMI.py isoquant_conda_enviroment.yml tidy_UMI.py umi_tools_conda_enviroment.ymlBreadcrumbs sctailor-tools / isoquant_conda_enviroment.yml Latest commit
Creating env using mamba: /Users/ewels/.nextflow/assets/nf-core/rnaseq/./workflows/rnaseq/../../subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/../fastq_fastqc_umitools_trimgalore/../../../modules/nf-core/fastqc/environment.yml [cache /Users/ewels/demo/mamba_test_2/work/...
added this to🧭 Planningon Aug 26, 2023 github-project-automation moved this to 🆕 New in🧭 Planningon Aug 26, 2023 najtin changed the titlejson.decoder.JSONDecodeError: Extra data: line 9 column 2 (char 280)conda fails to read repodata: json.decoder.JSONDecodeError: Extra data: li...
42 read_umi_tools, 43 ) ---> 45 from . import datasets, experimental, external, get, logging, metrics, queries 46 from . import plotting as pl 47 from . import preprocessing as pp File ~/.conda/envs/infercnvpy/lib/python3.10/site-packages/scanpy/experimental/init.py:3 1 fromfutureimpo...
nextflow_config - Config default value correct: params.group_by_umi_strategy= Adjacency nextflow_config - Config default value correct: params.aligner= bwa-mem nextflow_config - Config default value correct: params.ascat_min_base_qual= 20 nextflow_config - Config default value correct: params.asca...
I read the conda-forge documentation and could not find the solution for my problem there. Issue: Installing matplotlib-base with python=3.6.0: $ conda create -n mpl-test matplotlib-base python=3.6.0 -c conda-forge importing matplotlib g...
PR checklist This comment contains a description of changes (with reason). If you've fixed a bug or added code that should be tested, add tests! If you've added a new tool - have you followed t...
nextflow_config - Config default value correct: params.umitools_extract_method= string nextflow_config - Config default value correct: params.umitools_grouping_method= directional nextflow_config - Config default value correct: params.aligner= star_salmon nextflow_config - Config default value correct:...
This fixes the conda env for the mirtop_quant process. The issue with pysam that is part of the env seems to be caused by the python version (3.6). Therefore, adding the python=3.7 dependency. Rela...