~/biosoft/sratoolkit/sratoolkit.2.8.2-1-centos_linux64/bin/fastdump -hcd~/biosoftmkdirSnpEff &&cdSnpEff## http://snpeff.sourceforge.net/## http://snpeff.sourceforge.net/SnpSift.html## http://snpeff.sourceforge.net/SnpEff_manual.htmlwget http://sourceforge.net/projects/snpeff/files/sn...
# Download SnpEff and SnpSift @@ -88,7 +88,7 @@ while true; do [Yy]* ) echo " - Installing latest Pangolin" mkdir -p latest_pangolin; wget -qO- https://api.github.com/repos/cov-lineages/pangolin/releases | grep "tarball_url" | grep -Eo 'https://[^\"]*' | sed -n '1p...