> Launching/home/ubuntu/tests/949573c551759dbba21b380d94c814b5/meta/mock.nf[prickly_leavitt] DSL2 - revision: 6a2b47e621 > Creating env using conda: conda-forge::decoupler-py=1.6.0 [cache /home/ubuntu/tests/949573c551759dbba21b380d94c814b5/work/conda/env-e8572468eaade6843c07829a0101aaf...
> Creating env using conda: /opt/actions-runner/_work/modules/modules/modules/nf-core/learnmsa/align/tests/../environment.yml [cache /home/ubuntu/tests/4f4530da6a90367fbb049e5d4326a1ba/work/conda/learnmsa_align-ee2a61efe198b1c36f5d3f63db677662] ...
生信流程大全-基于nextflow的nf-core 生物基因 题目:The nf-core framework for community-curated bioinformatics pipelines 生信技能树 2020/03/10 3.2K0 给学徒的ATAC-seq数据实战 accessnathttpgo数据库 本次给学徒讲解的文章是 :The landscape of accessible chromatin in mammalian preimplantation embryos. Nature ...
最近有很多朋友问我生信工具安装的问题,对于初学者来说,工具安装是一个非常头疼的问题。不同的工具用不同的语言编写,有的解压后直接就可以用,有的还要编译,涉及到各种依赖关系。今天小编教大家如何使用conda安装生信工具。 Conda其实就是一个开源的软件包和环境管理系统,可以帮助我们解决软件安装过程中的各种问题。 首...
nf-call-iptables: No such file or directory解决方法:[root@localhost ~]# modprobe br_netfilter[root@localhost ~]# ls /proc/sys/net/bridgebridge-nf-call-arptables bridge-nf-filter-pppoe-taggedbridge-nf-call-ip6tables bridge-nf-filter-vlan-taggedbridge-nf-call-iptables bridge-nf-pass-vlan-...
2023年3月22日,某用户安装hamstr遇到了“conda: command not found”的错误。 安装步骤 conda install -c bionf hamstr setup_hamstr 错误提示 Installing dependencies... .../HaMStR/h1s/setup/setup_conda.sh: line 99: conda: command not found pkg-config .../HaMStR/h1s/setup/setup_conda.sh: line ...
您正在尝试安装到带有arm处理器的mac上（请参阅conda info输出中的platform : osx-arm64）。但是https:...
Bug report In @nf-core we recently removed name from our conda environment.yml files. We knew that there was an issue that affect CI tests with this, but it seems that it also affects users. As discussed in nf-core/modules#6664 we are no...
> Creating env using conda: /opt/actions-runner/_work/modules/modules/modules/nf-core/pharokka/pharokka/tests/../../installdatabases/environment.yml [cache /home/ubuntu/tests/6dbe844a004a70ff2a3a2f4c1371d4af/work/conda/pharokka_installdatabases-4a97adf9dce8e6510a265f9534fc6dfe] ...
代码conda config --get channels 可以看到自己的镜像配置,相当于修改~/.condarc里面内容,目前不同地区镜像效果大家最好是实时查询一下。 把安装好的环境导出成为yaml文件 前面的RNA-seq数据处理环境,我顺利安装了十几个软件而且没有冲突,就可以 conda env export - 成为一个yaml文件,如下所示: ...