问Conda未能安装VEPEN然而，对于osx-64，我发现channel_priority必须设置为flexible，否则Conda必须屏蔽一些...
I created a fresh conda environment. I installed vep withmicromamba install -c bioconda ensembl-vep. (I already have conda-forge and bioconda in that order in my .condarc, but figured I'd be specific.) I got no installation errors. Howevervepwill not run properly. Additional information See...
Conda is an open source package management system and environment management system that runs on Windows, macOS and Linux. Conda quickly installs, runs and updates packages and their dependencies. Conda easily creates, saves, loads and switches between environments on your local computer. It was cr...
conda config--remove channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/conda config --remove channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/# 再次安装,继续报错 condainstall-c bioconda ensembl-vep # Collecting package metadata (current_repodata.json):done#...
vep -> ensembl-vep sratoolkit -> sra-tools 查看conda环境中已安装的软件 基本用法:conda list 查看当前环境所安装的软件 扩展用法:1.查看符合正则表达式的软件conda list fast* 2.查看指定的环境的软件conda list -n rna 删除软件 conda remove fastqc ...
##我们认知的软件名(通过文献或是公众号)和conda给的名字不一样,先搜索,如下的软件 trim_galore -> trim-galore vep -> ensembl-vep sratoolkit -> sra-tools bioconda是一个频道,里面是有与生信相关的软件。看看bioconductor与生信相关的R包。 查看已安装的软件: • conda list • conda list fast* (比...
# ensembl-vep conda package installs most recent version of LoF automatically, however # it doesn't work with the most recent perl 5.26 (see https://github.com/sigven/cpsr/issues/2). # Also Loftee for hg38 needs Perl-Bio-BigFile (doesn't come with ensemble-vep, but will come # wit...
conda install tensorflow-gpu=1.12 cudatoolkit 这种方式下，每个虚拟环境需要单独安装它所对应的cuda以及...
vep->ensembl-vep sratoolkit->sra-tools bioconda是一个频道,里面是有与生信相关的软件。看看bioconductor与生信相关的R包。 查看已安装的软件: • conda list • conda list fast* (比如很早就安装某个软件,如果只想起四个字母,用通配符的去查找) ...
1. 建立以及激活环境: conda create -n vep conda activate vep 如果需要安装特定的python版本,示例:conda create -...