conda install -c conda-forge bedtoolsconda install -c conda-forge samtoolsconda install -c conda-forge gatkconda install -c conda-forge htslibconda install -c conda-forge bcftoolsconda install -c conda-forge sambambaconda install -c conda-forge vcftoolsconda install -c conda-forge bwaconda insta...
问无法使用conda安装htslib v1.12EN指令OP引用来自Anaconda Cloud，它是通用的，缺少使用专门通道通常需要...
samtools 1.x Using htslib 1.x 如果在安装过程中遇到任何问题,例如网络连接问题或依赖项缺失,你可以参考以下解决方案: 网络连接问题:确保你的网络连接是稳定的,或者尝试更换conda源为国内镜像,如中科大源。 依赖项缺失:conda通常会自动处理依赖项,但如果遇到依赖项缺失的问题,你可以根据错误信息使用conda install命...
#packages that no other package depends on$ conda-tree leaves samtools bcftools etc#dependencies of a specific package$ conda-tree depends samtools curl xz libgcc zlib#which packages depend on a specific package$ conda-tree whoneeds xz samtools bcftools htslib python#dependency cycles$ conda-tree ...
This pulls the last versions of htslib and samtools, that are no longer linked to libcrypto.so1.0.0, and should solve your issue. Else, try to run conda update --all after setting up bioconda and conda-forge channels, then install your package. Contributor dpryan79 commented Mar 26, 2019...
apscheduler 3.6.3-py37hc8dfbb8_1 --> 3.7.0-py37hf985489_0 bzip2 1.0.8-h0b31af3_2 --> 1.0.8-hc929b4f_4 htslib 1.3-0 --> 1.12-hc38c3fb_1 jupyter conda-forge/noarch::jupyter-1.0.0-py_2 --> conda-forge/osx-64::jupyter-1.0.0-py37hf985489_6 libllvm9 9.0.1-h7475705_1...
(bio) [username@server1]$ samtools Program: samtools (Tools for alignments in the SAM format) Version: 1.7 (using htslib 1.7) Usage: samtools [options] Commands: -- Indexing dict create a sequence dictionary file faidx index/extract FASTA index index alignment -- Editing calmd recalculate ...
conda install --use-local /path/to/samtools-1.10-h9402c20_2.tar.bz2 安装完成后,发现报错如下: 这表明,缺失samtools的依赖包,hts。随后在 继续搜索hts,发现htslib 下载htslib 并安装,方法如前述。 按照完成后我们发现,这个报错已经解决。 libhts缺失的报错已经消失,但是出现一个新的报错。这同样是缺失依赖包...
File "/home/yangjy/miniconda3/envs/chipseq/lib/python2.7/site-packages/pysam/__init__.py", line 5, in<module>from pysam.libchtslib import * ImportError: libhts.so.2: cannot open shared object file: No such file or directory 正常情况:(deeptools)[yangjy@GSCG01 ~]$ bamCoverage-h ...
//repo.continuum.io/pkgs/free harfbuzz 1.9.0 h04dbb29_1 conda-forge hdf5 1.10.2 hc401514_3 conda-forge heapdict 1.0.0 py36_1000 conda-forge html5lib 1.0.1 py_0 conda-forge htslib 1.7 0 bioconda httplib2 0.10.3 py36_0 conda-forge hyperlink 17.3.1 py_0 conda-forge hypothesis ...