$ conda config --setauto_activate_basefalse#conda关闭自动激活base环境,也可使用true重新打开$ conda search augustus#conda搜索安装包$ conda install samtools,vcftools#使用conda一次安装多个软件包$ conda install --file=pkgs.txt#将需要安装的包名依次分行写入pkgs.txt然后一次安装$ conda list# 列出已安装的包...
运行如下命令安装:conda install -c bioconda busco 错误1:failed to initial frozen solve. failed to initial frozen solve. Retring with flexible solve 解决办法:降低python版本至3.6。 错误2: AUGUSTUS_CONFIG_PATH is not set ERROR The environment variable AUGUSTUS_CONFIG_PATH is not set 解决办法: expor...
@mhuff10It worked for me (could you tryimport busco?) My conda version is 4.8.4 conda create -n busco_testconda activate busco_testconda install -c bioconda -c conda-forge busco=4.1.4 augustus=3.3.3busco --help Matthew Huff@mhuff10·4 years ago I am currently attempting to run those ...
(Note that your example has "augustus=3.3", which might not be legal syntax. Or perhaps 'conda' allows both "=" and "==".) Anyway, I could do what you're suggesting, which it to 'pip install' at the end. It also looks like there's a Singularity recipe, and we might try that...
$ conda install-c bioconda augustus (3) 安装hmmer $ conda install-c bioconda hmmer (4) 安装busco $ conda install-c bioconda busco (5) 安装biopython1.77 $ conda install-c bioconda biopython=1.77 测试 $ busco-h usage:busco-i[SEQUENCE_FILE]-l[LINEAGE]-o[OUTPUT_NAME]-m[MODE][OTHEROPTIONS...
AUGUSTUS编译其实不是一件比较麻烦的事情,官方说了,你只需要用`sudo apt-get install libboost-xxx`把boost库安装,然后就用make就好了。但是问题在于我没有root权限呀,于是我就只能自己编一个boost-1.66。然后我把boost的lib加入到环境变量LIBRARY_PATH中和LDFLAGS,保证安装的时候会被用到。当然,机智的我还会修改他的...
conda install biopython 检查augutus是否可以使用,查看可以使用的物种数据库。 (buscoEnv)@animalia:~$ augustus--species=help usage:augustus[parameters]--species=SPECIESqueryfilename whereSPECIESis one of the following identifiers identifier|species---|---pea_aphid|Acyrthosiphonpisum#豌豆蚜aedes|Aedesaegypti...