Our distance-based phylogenetic tree of 109 prokaryotes and eukaryotes agrees with the biologists' 'tree of life based on the 16S-like rRNA genes in a majority of basic branchings and most lower taxa. Our phylogenetic analysis also shows that the chloroplast genomes are separated into two major...
Over the past two decades, the plastid genome sequence has served as a valuable resource for DNA barcoding in plant identification24, and it can also contribute to the development of informative markers for population studies25. The significance of the plastid genome extends to phylogenetic analysis,...
in the phylogenetic tree of the genusCorynebacterium[6], were frequently associated with infections in immunocompromised patients.C. urealyticumis primarily recovered from hospitalized elderly individuals and can cause urinary tract infections [7], whereasC. jeikeiumis associated with a variety of nosocomia...
The phylogenetic relationships of Fischoederius elongatus and other trematodes based on concatenated amino acid sequence data representing 12 protein-coding genes by Maximum Likelihood analysis, using Taenia solium as an outgroup Full size imageReferences...
The medicinal fungus Laetiporus sulphureus is widely distributed worldwide. To screen for molecular markers potentially useful for phylogenetic analyses of this species and related species, the mitochondrial genome of L. sulphureus was sequenced and asse
An unrooted phylogenetic tree was constructed after 1,000 rounds of bootstrapping. The tree was used for classifying OR gene families and subfamilies. Pig OR sequences that did not form a cluster with any reference ORs from the other three species were additionally classified using a sequence ...
(Table S6). These plant mitogenomes were obtained from NCBI. Then a phylogenetic tree was constructed using the maximum likelihood analysis with the GTR + G model and 1,000 bootstrap replicates. This phylogenetic tree displayed the high bootstrap support values of more than 80 for most ...
A phylogenetic tree inferred from 14 mt proteins in Pezizomycotina fungi supports that P. chlamydosporia is most closely related to the entomopathogenic fungus M. anisopliae. The invertebrate-pathogenic fungi in Hypocreales cluster together and clearly separate from a cluster comprising plant-...
we sequenced and annotated the complete mitogenomes ofN. pilipes,T. antipodianaandT. vitianato determine their features and phylogenetic relationship. Therefore, this study aims to elucidate the relationship ofNephilaandTrichonephilaspecies and support the taxonvitianaas a valid species of the genusTrich...
Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat. 2009;30:E386–94. Article PubMed Google Scholar Weissensteiner H, Pacher D, Kloss-Brandstatter A, Forer L, Specht G, Bandelt HJ, et al. HaploGrep 2: era of high-throughput sequencing. Nucleic ...