http://weizhongli-lab.org/metagenomic-analysis 会反馈给你4个结果,output.1和output.2分别是两个非常相近的比对结果,而output.2.family是按照COG的编号排出来的结果,output.2.class是在COG大的分类上的一个统计结果 2,使用陈博士的脚本 mkdir /sam/cog cd /sam/cog wget ftp://ftp.ncbi.nih.gov/pub/CO...
public Set<Feature> getWordFeatures(TextAnnotation ta, int wordPosition) throws EdisonException { lazyLoadClusters(brownClustersFile); if (!ta.hasView(viewGenerator.getViewName())) { synchronized (BrownClusterFeatureExtractor.class) { View view = null; try { view = viewGenerator.getView(ta); }...
包路径:edu.illinois.cs.cogcomp.annotation.AnnotatorException 类名称:AnnotatorException 方法名:printStackTrace AnnotatorException.printStackTrace介绍 暂无 代码示例 代码示例来源:origin: CogComp/cogcomp-nlp /** * return the next annotation object. Don't forget to increment currentAnnotationId. ...
类名称:TextAnnotation TextAnnotation介绍 [英]This class contains all annotation for a single piece of text (which could contain more than one sentence.) [中]此类包含单个文本(可能包含多个句子)的所有注释 代码示例 代码示例来源:origin: CogComp/cogcomp-nlp ...
COG database annotation Step 1 wget -bc -r -np -nH -nd ftp://ftp.ncbi.nih.gov/pub/COG/COG2020/data/fasta wget -bc ftp://ftp.ncbi.nih.gov/pub/COG/COG2020/data/cog-20.cog.csv wget -bc ftp://ftp.ncbi.nih.gov/pub/COG/COG2020/data/cog-20.def.tab...
class, directory); else files = IOUtils.getListOfFilesInDir(directory); String file = IOUtils.getFileName(url.getPath()); 代码示例来源:origin: CogComp/cogcomp-nlp public void writeModelsToDisk(String dir, String modelName){ IOUtils.mkdir(dir); chunker.write(dir + File.separator + model...
packagecom.samplepackage;publicclassMyClass{StringmyString=null;StringmyString2=null; {// Contents of the indented section (1)// Contents of the indented section (2)}publicstaticvoidmain(String[]args) {if(args.length==0) {System.out.println("Require more than one argument"); }elseif(args...
Supported by the Intelligence Advanced Research Projects Activity (IARPA) via Department of Interior/ Interior Business Center (DOI/IBC) contract number D17PC00341. The U.S. Government is authorized to reproduce and distribute reprints for Governmental purposes notwithstanding any copyright annotation th...
While functionally correct, there's a slight discrepancy between the type annotation and the actual usage pattern. The type annotation indicates a function that takes only one string parameter, but the actual function being passed from run_question_answering_module.py is a curried function that inte...
答:以KEGG的注释结果为例:可查找结果文件7-FunctionAnnotation/1.KEGG/Unigenes.KEGG.tax.xls,在其中找到关注的功能已经对应的Gene_ID,返回到5-TaxAnnotation/2.Tables/gene.taxonomy.xls 中使用Gene_ID搜索找到对应的物种名称。Q2:如何查找显著差异基因的具体序列?答:先根据差异分析结果挑选出感兴趣的KO号,根据KO...