coexpression network for putamen in GTEXAlejandro, Caceres
方法/步骤 1 根据基因在样本中的信号表达值，利用基因间的相互作用（相关系数）来拟合基因的无标度网络关系，构建基因间的共表达网络，结果样式如图。点：图中每个圆点代表一个基因。2 颜色：对于两分组（例如实验组和对照组），红色点为上调基因，蓝色为下调基因，对于多分组（例如 组1，组2，组3），由于差异基...
coexpression network for cerebellum BRAINEACAlejandro, Caceres
Hartl, C.L., Ramaswami, G., Pembroke, W.G.et al.Coexpression network architecture reveals the brain-wide and multiregional basis of disease susceptibility.Nat Neurosci24, 1313–1323 (2021). https://doi.org/10.1038/s41593-021-00887-5 ...
A large variety of differential coexpression analysis methods have been developed, such as the Log Ratio of Connections11, Average Specific Connection12, Weighted Gene Coexpression Network Analysis (WGCNA)13, Differential Coexpression profile (DCp)14, Differential Coexpression enrichment (DCe)14, ...
Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data - petitmingchang/TO-GCN
Weighted Gene Co-expression Network Analysis:权重基因共表达网络分析 热度: Gene Co-expression Network Analysis基因共表达网络分析 热度: Signed weighted gene co-expression network analysis of 热度: 相关推荐 StatisticalApplicationsinGenetics andMolecularBiology Volume4,Issue12005Article17 AGeneralFramework...
We use R-packet WGCNA for co-expression-network analysis [94]. The imported data were the FPKM values of all genes, and all low-expression genes were removed (FPKM < 1 in each treatment; we believed that the gene was not expressed), and the first 75% of the absolute deviation gen...
For the purpose of the current analysis we chose a threshold for the network graph of 0.75. Less stringent correlations may still be informative. Using the “correlation” tool on the BioGPS website, one can find the closest “friends” of any gene on the arrays. For example, IFITM2 and...
To reveal the differences in the gene regulation of the drought response in sunflower varieties with contrasting drought tolerances, weighted gene coexpression network analysis (WGCNA) was performed on the 12,892 DEGs (Fig.8). Firstly, all the samples were clustered and it was found that the ...