It is a challenge to classify protein-coding or non-coding transcripts, especially those re-constructed from high-throughput sequencing data of poorly annotated species. We developed and evaluated a powerful signature tool, Coding-Non-Coding Index (CNCI), by profiling adjoining nucleotide triplets to...
As a class, the 74 aRs showed a much lower coding potential compared with mRNA in our dataset using each of three programs: Coding Potential Calculator (CPC2),44 Coding-Potential Assessment Tool (CPAT),45 and Coding-Non-Coding Index (CNCI)46 (p < 0.0001 in each case; Kruskal-Wallis test...
Coding-Non-Coding Index E: Embryonic day FPKM: Fragments per kilobase of exon per million reads GEO: Gene expression omnibus lincRNA: Long intergenic non-coding RNA M1: First molar M2: Second mola M3: Third molar nt: Nucleotides PN: Postnatal day qRT-PCR: Quantitative real-...
On the other hand, alignment-free methods like the Coding Potential Assessment Tool (CPAT), Coding-Non-Coding Index (CNCI), PLEK (predictor of long non-coding RNAs and messenger RNAs based on an improved k-mer scheme), lncScore, Coding-Non-Coding Identifying Tool (CNIT), CPPred and Deep...
Coding non-coding index CPC: Coding potential calculator Cq: Quantitation cycle FPKM: Fragments per kilobase of transcript per million mapped reads GO: Gene ontology KEGG: Kyoto Encyclopedia of Genes and Genomes lncRNA: Long non-coding RNA lincRNA: Long intergenic non-coding RNA inc...
(accessed on January 1 2024) to identify thecis-acting regulatory elements [77]. The MEME suite (http://meme-suite.org/index.html) was used to analyse the conserved motifs of the exon region of the selected DE-mRNAs [78]. Only motifs with an e-value < 1e − 20 were ...
H-Index 43 Publication type Journals ISSN 2311553X Coverage 2015-2024 Information Homepage How to publish in this journal ncRNA@mdpi.com Scope The scope of non-coding RNA includes, but is not limited to, the following subjects: -Functional studies dealing with identification, structure-function rel...
LncRNA(Long non-coding RNAs)是一类长度大于200nt但不编码蛋白质,广泛存在于动植物中,具有很强的细胞或组织特异性的RNA分子。IncRNA测序可一次性获取样本中几乎全部的IncRNA信息,对IncRNA的类别、功能进行全方位的深入分析,从而快速全面准确的获得与特定生物学过程相关的IncRNA信息。
Human markers of grid cell coding of non-spatial cognitionAlexandra Constantinescu
circRNA是一类以共价封闭环为特征,广泛存在于真核生物中的新型RNA分子。CircRNA来源于基因的外显子或者内含子区域,在哺乳动物细胞中大量存在。