转录本可编码性在线计算平台软件(Coding Potential Calculator Online)是由北京大学著作的软件著作,该软件著作登记号为:2009SR04808,属于分类,想要查询更多关于转录本可编码性在线计算平台软件(Coding Potential Calculator Online)著作的著作权信息就到天眼查官网!
COME (coding potential calculator based on multiple features) is a computational tool that predicts the coding potential for a given transcript. It integrates multiple sequence-derived and experiment-based features using a decompose-compose method, which makes COME’s performance more accurate and robust...
free tool, named Coding-Non-Coding Index (CNCI), and 244 times faster than the most popular alignment-based tool, Coding Potential Calculator (CPC), in a single-threading running manner. Conclusions PLEK is an efficient alignment-free computational tool to distinguish lncRNAs from mRNAs in RNA-s...
Coding potential calculator H3K4me3: Tri-methylation of H3 lysine 4 H3K36me3: Tri-methylation of H3 lysine 36 lincRNA: Long intergenic non-coding RNA lncRNA: Long non-coding RNA MSL: Male specific lethal Pol II: RNA polymerase II RT-qPCR: Quantitative reverse transcriptase-dependent...
A comparative analysis shows that our method outperforms the existing two state-of-the-art methods—the CPC (Coding Potential Calculator) and the PORTRAIT in classifying transcripts from the test dataset.doi:10.1007/978-3-319-00536-2_125Ashis Kumer Biswas...
including identifying lncRNAs using the Coding Potential Calculator (CPC)47. Another important database is GreeNC38,48, which also uses a predictive annotation through CPC to identify lncRNAs in different species based on transcripts available in Phytozome49and ENSEMBL50, including 2752 genes inA. tha...
We assessed the coding potential of LASER by two prevailing tools, CPAT (Coding Potential Assessment Tool) and CPC (Coding Potential Calculator). For CPAT, the coding probability was 0.0126834, indicating that LASER was a non-coding transcript. For CPC, transcripts with scores of more than 1 ...
CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features. Nucleic Acids Res , 2017 , 45: W12 -W16 CrossRef Google Scholar [36] Khan M.R., Wellinger R.J., Laurent B. Exploring the alternative splicing of long noncoding RNAs. Trends Genet , 2021 ,...
Coding Potential Calculator CNCI: Coding-Non-Coding Index TPM: Transcripts per million GAPDH: Glyceraldehyde-3-phosphate dehydrogenase References Zhou JX, Li GL, Xia H, Xiao B, Bi FF, Liu D, et al. Cerebral Schistosomiasis japonica without gastrointestinal system involvement. Surg Neurol. 200...
The remaining sequences were submitted to five coding potential calculator tools (CP tools): Coding Potential Calculator 2 (CPC2) py3 v.1.0.198, RNASamba v.0.2.599, Coding-Potential Assessment Tool (CPAT) v.3.0.4100, RNAmining v.1.0.4101 and PLEK v.1.2102. A similar approach was ...