J. Coarse-grained modeling of DNA curvature. J. Chem. Phys. 141, 165103 (2014). Article ADS PubMed Google Scholar Hinckley, D. M., Freeman, G. S., Whitmer, J. K. & de Pablo, J. J. An experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, ...
Coarse-grained simulations of branched bilayer membranes: effects of cholesterol-dependent phase separation on curvature-driven lipid sorting[J] . Kazuhisa Nishizawa,Manami Nishizawa.Journal of Biophysical Chemistry . 2011 (03)Nishizawa, M., and K. Nishizawa. 2011. Coarse-grained simulations of ...
As far as the effect of membrane tension on translocation, it is generally thought that tension should disorder the membrane structure and weaken its strength, thereby facilitating penetration. However, our coarse-grained molecular dynamics simulation results showed that membrane tension can restrain poly...
Curvature-driven lipid sorting: Coarse-grained dynamics simulations of a membrane mimicking a hemifusion intermediate. J. Biophys. Chem. 2010; 1 :86–95.Nishizawa, M.; Nishizawa, K. Curvature-driven lipid sorting: coarse-grained dynamics simulations of a membrane mimicking a hemifusion intermediate...
Curvature-driven lipid sorting: coarse-grained dynamics simulations of a membrane mimicking a hemifusion intermediate. J. BioPhys. Chem. 2010; 1 :86–95.Nishizawa, M.; Nishizawa, K. Curvature-driven lipid sorting: coarse-grained dynamics simulations of a membrane mimicking a hemifusion intermediate...
Yoo J, Cui Q. Curvature generation and pressure profile modulation in membrane by lysolipids: insights from coarse-grained simulations. Biophys J 2009 ; 97:2267 - 76; http://dx.doi.org/ 10.1016/j.bpj.2009.07.051 ; PMID: 19843459Yoo J., Cui Q. Curvature generation and pressure profile ...
(2009). Simulations of flexible membranes using a coarse-grained particle-based model with spontaneous curvature variables. Physica A: Statistical Mechanics and Its Applications, 388(17), 3334-3344.Kohyama T. Simulations of flexible membranes using a coarse-grained particle-based model with ...
Does it have an intrinsic curvature/bending stiffness? None of these questions have clear, definitive answers in the literature, currently. While it is well known that chromatin behavior is heterogeneous, depending on the epigenetic state, existing coarse-grained models of chromatin typically assume th...
The physiological properties of biological soft matter are the product of collective interactions, which span many time and length scales. Recent computational modeling efforts have helped illuminate experiments that characterize the ways in which protei