除了标准的富集分析结果,cnetplot() 函数也支持基因集富集分析 (GSEA) 的结果展示,并仅显示核心富集基因。 cnetplot函数所需要的输入内容: 代码语言:javascript 代码运行次数:0 运行 AI代码解释 library(DOSE)data(geneList);head(geneList)de <- names(geneList)[abs(geneList) > 2]edo <- enrichDGN(de);...
假设我们有一个包含5个节点和6条边的简单网络,我们首先需要创建这个网络对象,然后使用cnetplot函数将其可视化为圈图。 AI检测代码解析 # 安装并加载cnet包install.packages("cnet")library(cnet)# 创建一个简单的网络nodes<-c("A","B","C","D","E")edges<-data.frame(from=c("A","A","B","C","...
在R升级到4.0+后,clusterProfiler的cnetplot会报如下的rescale错误,这个现象以及解决方法在以前的推文:R tips:debug并修复一个ggplot2绘图错误的例子中曾经说过。现在再提到一次,主要是对这个现象进一步的进行深入探讨,并给出一个更加优雅的解决办法。 代码语言:javascript 代码运行次数:0 运行 AI代码解释 Error in UseM...
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cnetplot methodGuangchuang Yu
if(getOption('cnetplot_subset',default=FALSE)) { Expand All@@ -33,9 +36,6 @@ cnetplot.list <- function( if(length(node_label)==1&&node_label=="gene")node_label="item" x<-subset_cnet_list(x,showCategory) g<-list2graph(x) ...
Hi, For further fine-tuning of the layout (because of overlapping nodes/labels) I would like to export the underlying networks generated by the cnetplot and emapplot functions for further processing in (e.g.) Cytoscape. I know that I can...
R语言cnetplot函数设置circular=TRUE之后，生成的网络图不是环状的，怎么办？R语言cnetplot函数设置circular...
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