Clusters of orthologous group (COG) function classification of the Liposcelis entomophila transcriptome.DanDan, Wei
NCBI使用手册(英文)ch22.The Clusters of Orthologous Groups (COGs) Database Phylogenetic Classification of Proteins from.pdf,Eugene V. Koonin The Clusters of Orthologous Groups (COGs) Database 22. The Clusters of Orthologous Groups (COGs) Database: Phylo
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea. Biol Direct. 2007; 2 :33.Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of ...
Results New Archaeal Clusters of Orthologous Genes (arCOGs) were constructed for 41 archaeal genomes (13 Crenarchaeota, 27 Euryarchaeota and one Nanoarchaeon) using an improved procedure that employs a similarity tree between smaller, group-specific clusters, semi-automatically partitions orthology domains...
. The identification of all 102 housekeeping genes within both cyanobacterial genomes suggests a near complete genome. The largest percentage of functionally categorised genes in bothW. intricataUH strain HT-29-1 andH. welwitschiiUH strain IC-52-3 (based on cluster of orthologous groups ...
The program 'anvi-run-ncbi-cogs' was run to annotate genes in the contigs databases with functions from the NCBI's Clusters of Orthologous Groups (COGs). Tables of gene caller IDs with start and stop nucleotide positions were exported by 'anvi-export-table'. By linking the gene caller IDs...
(40.41%). About 60% of all identified proteins were assigned to 22 categories using the Clusters of Orthologous Groups (COG) database (Fig. 2C). The main functional categories were “General function prediction only” (27.62%), “Translation, ribosomal structure and biogenesis” (11.60%), “...
of both zebra finch and chicken, but present in lizards. To gain a more comprehensive understanding of the extent of possible avian gene losses, we decided to systematically apply this approach to the entire genome of birds. Specifically, we compared the syntenic arrangements of orthologous genes ...
Interestingly the TFP architecture is seen also in the TGFβ receptor family of proteins including BMP2 and activin receptors (4).A large protein family encompassing an extensive group of GPI-anchored, transmembrane, and secreted proteins contains this domain. The prototype secreted-protein members ...
Clusters of Interdisciplinary Research on International Themes Clusters of Orthologous and Paralogous SEquences Clusters of Orthologous Groups Clusters of Thymic Epithelial Staining Clusters per Sector Clusters Policy Steering Group clusters together ClusterXL for Load Sharing Clustery Clustery Clustery CLUT ...