CLIP Tool Kit (CTK). Contribute to chaolinzhanglab/ctk development by creating an account on GitHub.
CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data. Bioinformatics 33, 566–567 (2017). Google Scholar Wang, Z. et al. iCLIP predicts the dual splicing effects of TIA–RNA interactions. PLoS Biol. 8, e1000530 (2010). Google Scholar Chen, B., Yun,...
CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data. Bioinformatics 33, 566–567 (2017). CAS PubMed Google Scholar Haberman, N. et al. Insights into the design and interpretation of iCLIP experiments. Genome Biol. 18, 7 (2017). Article PubMed PubMed ...
CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data Summary: UV cross-linking and immunoprecipitation (CLIP), followed by high-throughput sequencing, is a powerful biochemical assay that maps in vivo protein... A Shah,Y Qian,SM Weyn-Vanhentenryck,... - 《...
Briefly, reads were unzipped using gunzip and then processed using the FastX Toolkit v0.0.14 (Gordon and Hannon, 2010) and the CLIP Tool Kit v1.0.7 (CTK)(Shah et al., 2017). Fastq reads were required to have a minimum quality of 20 over 80% of the read (FastX fastq_quality_filter...
CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data. (CLIP), followed by high-throughput sequencing, is a powerful biochemical assay that maps in vivo protein-RNA interactions on a genome-wide scale. The... Shah,Ankeeta,Yingzhi,... - 《Bioinformatics》 被引...
Discovery of interaction sites between RNA-binding proteins (RBPs) and their RNA targets plays a critical role in enabling our understanding of how these RBPs control RNA processing and regulation. Cross-linking and immunoprecipitation (CLIP) provides a
Neural Tissue Dissociation Kit (P) Miltenyi Biotec Cat#130-092-628 Debris Removal Solution Miltenyi Biotec Cat#130-109-398 CD11b (Microglia) MicroBeads Miltenyi Biotec Cat#130-093-636 Dynabeads mRNA Purification Kit Ambion Cat#61006 Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat) Illumina Cat#MRZH...