An extensive literature search was conducted to find DMCs of microorganisms for which ONT data was publicly available, resulting in nine datasets, summarized in Table1. For all nine DMCs, ONT data generated with the R9 technology was available, and for one DMC also data generated with the R10 ...
The second model is intended to allow identification of each of the five microorganisms. Table 1 lists the classification accuracy for each dataset. All sensitivities, specificities, and confusion matrix metrics associated with each dataset are described in the Supplementary Tables 3–10. Table 1 ...
There are 8.7 million known species of living things (not including bacteria or other microorganisms) in the world; thus, classifying them would help us better understand them and their relationships. Also, the classification of organisms allows scientists to communicate more effectively and expand on...
The vast increase in the number of 16S ribosomal RNA gene sequences that are now available has led to an urgent need to implement taxonomic boundaries and classification principles that can apply to both cultured and uncultured microorganisms. In this An
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs / bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of...
Sequences (protein) from Escherichia coli K12 [29] were also curated to assess the sensitivity of ARGNet towards one of the most extensively studied microorganisms. 4. The mcr gene sequences were collected to investigate the consistency of resistance phenotype prediction between ARGNet and phylogen...
supervised classification, namely: (i) taxonomic classification—to identify the organisms in the sample; (ii) functional classification—to determine the functions that can be performed by the microorganisms from the sample; and (iii) environmental classification—to identify the origin of the sample....
SMART is the first scalable, efficient, and rapid metagenomics classification algorithm capable of matching against all the species and sequences present in the NCBI GenBank and allows for a single step classification of microorganisms as well as large plant, mammalian, or invertebrate genomes from ...
Currently, genetic typing of microorganisms is widely used in several major fields of microbiological research. Taxonomy, research aimed at elucidation of ... V Belkum,Struelens,D Visser,... - 《Clinical Microbiology Reviews》 被引量: 243发表: 2001年 The microbial contribution to macroecology Th...
They are mostly heterotrophic. They feed on bacteria, algae, yeast and other microorganisms. They are holozoic. The food-laden water is drawn inside by the movement of cilia and it goes to the cytostome and to the gullet (cytopharynx). ...