每个ChIP-seq和DNase-seq样本都有一个唯一的数据集ID, Cistrome DB为每个数据集(包含手动管理的元数据)进行注释,包括物种、因素、生物来源、发布时间和处理状态。点击单个数据集可获取分析结果和质控指标,点击多个数据集可提取批量数据查看,选择感兴趣的数据集后我们可以将数据发送到genome browser(WashU Browse:、UCSC ...
Result下面还有Inspector部分,在红框地方,我们可以点击WashU Brower以及UCSC Browser进行浏览。需要注意的是篮框,我们用到的是CistromeDB:37606的数据。 1. 点击WashU Browser显示如下: 我们可以点击黑灰色部分(上图红色圈圈),弹出如下窗口,进去可以搜索...
总的来说,通过Cistrome DB ,可以直接关键词搜索,也可以通过toolKit进行可以检索哪个因子调控了我们感兴趣的基因、结合在该区域;输入peak结果,查看哪些转录因子的结果与你的输入结果有明显的overlap,转录因子的colocation分析。Cistrome-GO还可以做转录因子ChIP-seq peak或者TF干扰表达的差异表达的功能富集分析,功能强大,下次...
cistrome data browser组蛋白靶基因cistrome databrowser组蛋白靶基因 Cistrome Data Cistrome DataBrowser是由清华大学与Dana-Farber癌症研究所联合开发的开放式基因组学数据库,专注于整合ChIP-seq、ATAC-seq等表观遗传学数据。该平台收录了超过5万组人类和小鼠的组蛋白修饰数据集,涵盖H3K4me3、H3K27ac等23种常见修饰...
The Cistrome Data Browser (DB) at the website (cistrome.org/db) provides about 56,000 published human and mouse ChIP-seq, DNase-seq, and ATAC-seq chromatin profiles, which we have processed using uniform analysis and quality control pipelines. The Cistrome DB Toolkit at the website (db...
Cistrome Data Browser使用初探 http://cistrome.org/db/#/ 转录因子.png 参考: 这题我会--如何弄清转录因子调控的基因(Cistrome DB数据库) - 知乎 (zhihu.com)
Cistrome Data Browser v2.0 A portal to browse public ChIP-seq and DNase-seq datasets. Besides providing a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human, it also provides functions to analysis and visualize these datasets. ...
Cistrome Data Browser v2.0 A portal to browse public ChIP-seq and DNase-seq datasets. Besides providing a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human, it also provides functions to analysis and visualize these datasets. ...
The Cistrome Data Browser (DB) is a resource of human and mouse cis-regulatory information derived from ChIP-seq, DNase-seq and ATAC-seq chromatin profiling assays, which map the genome-wide locations of transcription factor binding sites, histone post-translational modifications and regions of chro...
(Cistrome Data Browser), available online at http://cistrome.org/db, is expected to become a valuable resource for transcriptional and epigenetic regulation studies. 中文翻译: Cistrome数据浏览器:用于人和小鼠中ChIP-Seq和染色质可访问性数据的数据门户。