点击单个数据集可获取分析结果和质控指标,点击多个数据集可提取批量数据查看,选择感兴趣的数据集后我们可以将数据发送到genome browser(WashU Browse:、UCSC Browse)进行联合分析,如辅因子、染色质调节因子与组蛋白修饰之间的关系等。 Result下面还有Inspec...
点击单个数据集可获取分析结果和质控指标,点击多个数据集可提取批量数据查看,选择感兴趣的数据集后我们可以将数据发送到genome browser(WashU Browse:、UCSC Browse)进行联合分析,如辅因子、染色质调节因子与组蛋白修饰之间的关系等。 Result下面还有Inspector部分,在红框地方,我们可以点击WashU Brower以及UCSC Browser进行浏...
http://cistrome.org/db/#/ 转录因子.png 参考: 这题我会--如何弄清转录因子调控的基因(Cistrome DB数据库) - 知乎 (zhihu.com)
也可见下图但是第二个——基因组中各转录因子结合位点信息列表(bed文件)我没下下来(本次操作不需要)利用基因组中各基因位置 信息列表(bed文件)和我的差异基因集文本文件,通过R合成一个ToolkitforCistromeDataBrowser要 求的bed文件——差异基因的基因位置BED文件(up172txt李同学帮助)。也可以通过EXCEL的VLOOKUP操作实现...
The Cistrome Data Browser (DB) at the website (cistrome.org/db) provides about 56,000 published human and mouse ChIP-seq, DNase-seq, and ATAC-seq chromatin profiles, which we have processed using uniform analysis and quality control pipelines. The Cistrome DB Toolkit at the website (db...
(Cistrome Data Browser), available online at http://cistrome.org/db, is expected to become a valuable resource for transcriptional and epigenetic regulation studies. 中文翻译: Cistrome数据浏览器:用于人和小鼠中ChIP-Seq和染色质可访问性数据的数据门户。
Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS. Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis. Nucleic Acids Res, 2018 Nov 20. Doi: 10.1093/nar/gky1094 ...
Cistrome Data Browser v2.0 A portal to browse public ChIP-seq and DNase-seq datasets. Besides providing a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human, it also provides functions to analysis and visualize these datasets. ...
Cistrome Data Browser v2.0 A portal to browse public ChIP-seq and DNase-seq datasets. Besides providing a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human, it also provides functions to analysis and visualize these datasets. ...
Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS. Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis. Nucleic Acids Res, 2018 Nov 20. Doi: 10.1093/nar/gky1094 ...