However, existing databases often focus on subsets of regulatory elements and present each identified instance of element individually, confounding the effort to obtain a comprehensive view. To address this gap,
PlantCARE,aplantcis-actingregulatoryelement database StephaneRombauts,PatriceDéhais,MarcVanMontaguandPierreRouzé 1, * LaboratoriumvoorGenetica,VlaamsInteruniversitairInstituutvoorBiotechnologie(VIB),UniversiteitGent, K.L.Ledeganckstraat35,B-9000Gent,Belgiumand ...
LTRE (low temperature responsive element) found in Arabidopsis thaliana lti78 gene was registered as LTREATLTI78 in the PLACE database. Furthermore identical motif sequence(s) with the same function found in other gene(s) and/or in other plant ...
Cis-regulatory elements (CREs) are short stretches (∼5–15 base pairs) of DNA capable of being bound by a transcription factor and influencing the expression of nearby genes. From: Current Opinion in Plant Biology, 2022 About this pageSet alert ...
S. REDfly: the transcriptional regulatory element database for Drosophila. Nucleic Acids Res. 47, D828–D834 (2019). Article CAS PubMed Google Scholar Blythe, S. A. & Wieschaus, E. F. Establishment and maintenance of heritable chromatin structure during early embryogenesis. eLife 5, e20148...
cis-regulatory element 顺式作用元件 顺式调控元件 Promoter is an important cis-regulatory element for gene expression and plays an important role in the process of plant gene expression and regulation.启动子是调控基因表达的重要顺式元件，在植物基因表达调控过程中起着重要作用。很高兴第一时间...
methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser. Bioinformatics 30, 2206–2207 (2014). CAS PubMed PubMed Central Google Scholar Burger, L., Gaidatzis, D., Schübeler, D. & Stadler, M. B. Identification of active regulatory ...
The AthaMap database generates a map of cis-regulatory elements for the Arabidopsis thaliana genome. AthaMap contains more than 7.4 x 10(6) putative binding sites for 36 transcription factors (TFs) from 16 different TF families. A newly implemented functionality allows the display of subsets of...
For example, PlantCARE http://oberon.rug.ac.be:8080/PlantCARE/index.html, a cis-regulatory element database for plants, contains information about 435 different plant TF binding sites in 159 promoters. From these 435 binding sites, 281 correspond to dicots. Clearly, this information is just a...
Changes incis-regulatory sequences, especially enhancers, make a substantial contribution to phenotypic diversity among and within species. Recent studies have begun to uncover the mechanisms underlying cis-regulatory divergence, such as the types of mut