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echo $id ~/biosoft/bowtie/bowtie2-2.2.9/bowtie2 -3 5 -p 8 -x ~/biosoft/bowtie/hg19_index/hg19 -U $id -S ${id%%.*}.sam 2>${id%%.*}.align.log; samtools view -bhS -q 30 ${id%%.*}.sam > ${id%%.*}.bam ## -F 1548https://broadinstitute.github.io/picard/explain-f...
-n: 输出文件的前缀名 -B:会保存更多的信息在bedGraph文件中,如fragment pileup, control lambda, -log10pvalue and -log10qvalue scores -q: q值,也就是最小的PDR阈值, 默认是0.05。q值是根据p值利用BH计算,也就是多重试验矫正后的结果。 -p:这个是p值,指定p值后MACS2就不会用q值了。 -m: 和MFOLD...
ghsNick said: I love Apple and everything they do...but if they seriously think I'll buy a phone at the end of 2014 (to use through 2016) with 1GB of RAM, they're out of their minds. Then you don't understand what RAM is for... Reason077 mac...
ghsDUDE macrumors 68030 May 25, 2010 2,949 763 Sep 9, 2014 #368 Moto G said: I bet you still buy one... you can't resist. I already have to reload tabs on my 5c...I'll resist doing that on a larger screen for 2 more years. If anything,...
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-B:会保存更多的信息在bedGraph文件中,如fragment pileup, control lambda, -log10pvalue and -log10qvalue scores -q: q值,也就是最小的PDR阈值, 默认是0.05。q值是根据p值利用BH计算,也就是多重试验矫正后的结果。 -p:这个是p值,指定p值后MACS2就不会用q值了。
SNP列产生于Zhou’s Nucleic Acids Research paper in 2016(http://zwdzwd.github.io/InfiniumAnnotation),专为450K和EPIC设计,它也考虑到人口差异。因此,对于450k珠阵列数据,在过滤低质量探针之前,数据集将包括485,512个探针。而对于EPIC珠阵列数据,在过滤探测数据集之前,将包括867,531个探针。