cpdb_file_path的路径是下载的v5 cellphone database里面的cellphonedb.zip,而不是v5整体那个压缩包 运行报错: File~/.local/lib/python3.9/site-packages/cellphonedb/src/core/methods/cpdb_analysis_method.py:180,incall(cpdb_file_path,meta_file_path,counts_file_path,counts_data,output_path,microenvs_fi...
write.table(meta_data,'cellphonedb_meta.txt',sep='\t',quote=F,row.names=F) 假设诸君已经安装好cellphonedb ,并加入环境变量了,我们可以这样跑: cellphonedb method statistical_analysis cellphonedb_meta.txt cellphonedb_count.txt --counts-data=gene_name # 如果是直接写出基因名的加这个参数,转化为基因...