6 SAMap scores for all cell type groups. a, b, Heatmaps of SAMap mapping scores for all groups of non-neuronal and neuronal cell types between mouse and lamprey, including all genes (a) and TF genes only (b). Extended Data Fig. 7 Correlations between cell type groups. a, b, Heat...
number of cells (Log size), number of cell types (Types), uneven distribution of cell types (Entropy) in training set, as well as asymmetry of cell types distribution in training and test set (Kullback-Leibler Divergence, DKL) (see “Methods”), and calculate their correlation with accuracy...
2. Calculate the FvA markers for that set(计算差异基因) 3. Run correlation and random-forest feseR to narrow down the genelist.(使用机器学习算法缩小预测变量范围) 4. Generate RFmodels based on feseR-restricted genesets(产生随机森林模型) 5. Check accuracy in fetal vs adult cells that were no...
cell2location.models.RegressionModel.setup_anndata(adata=adata_ref,batch_key='orig.ident',# 10X reaction/sample/batch labels_key='cell_type'# cell type,covariate usedforconstructing signatures #categorical_covariate_keys=['Method']# multiplicative technicaleffects(platform,3' vs 5',donor effect)) ...
LIGER(Linked Inference of Genomic Experimental Relationships,基因实验关系的链接推断)是一个用于整合和分析多个单细胞数据集的软件包,由Macosko实验室开发,并由Welch实验室维护和扩展。它依赖于整合的非负矩阵分解技术来识别共享的和数据集特定的因子。 LIGER可以用来在多种背景下比较和对比实验数据集,例如: ...
Exploring Complex and Heterogeneous Correlations on Hypergraph for the Prediction of Drug-Target Interactions Patterns 高跃(清华大学) 使用基于多重基因量化的“数字化标志物”快速评估化疗药物敏感性 Multiplex gene quantification as digital markers for extremely rapid evaluation of chemo-drug sensitivity ...
Correlation of actin crosslinker and capper expression levels with stereocilia growth phases Mol. Cell. Proteomics, 13 (2014), pp. 606-620 View PDFView articleView in ScopusGoogle Scholar Bacher et al., 2017 R. Bacher, L.F. Chu, N. Leng, A.P. Gasch, J.A. Thomson, R.M. Stewart, ...
correlation coefficient between the weights assigned to the shared edges in the respective subgraphs of both networks. To evaluate the topology similarity, the Spearman correlation coefficient was computed for the transformed topological specificity (topStransf) across all shared nodes. The transformation ...
Intermediate filament protein profiles of human testicular non-seminomatous germ cell tumors: correlation of cytokeratin synthesis to cell differentiation. Differentiation. 1991;48(3):191–8. Article CAS PubMed Google Scholar Cheville JC, Rao S, Iczkowski KA, Lohse CM, Pankratz VS. Cytokeratin ...
Spatial transcriptional network and heterogeneity of NPCs in the cortical regions of the a Correlations between module eigengenes and the spatial regions of the kidney. The numbers within the heatmap represent Pearson correlations and P-values (red, positively correlated; green, negatively correlated)...