The second largest non-neuronal subtree consists of astrocytes and ependymal cells (39.1%). Astrocytes with high levels ofSlc1a2andGjb6were divided into nine clusters (Fig.2a). These include a cluster of reactive astrocytes (C66-54: Lgals3.Astrocytes), marked with high expression ofGfapandLgal...
3. Hutter, C. & Zenklusen, J. C. The Cancer Genome Atlas: Creating Lasting Value beyond Its Data.Cell(2018) doi:10.1016/j.cell.2018.03.042. 4. Barretina, J. et al. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.Nature483, 603–607 (2012)...
Arrows in o point at germ cells with lower expression of blanks. White line in p demarks the border between germ cells and somatic cells. GSC: germline stem cell; undif.: undifferentiated; gc: germ cell; protein prod.: protein production; SC: synaptonemal complex; DSB: double-strand break...
The cell type labels can be supplied as a path to the file containing cell type label per line corresponding to the cells in gene expression data. Any list-like objects (such as a tuple or series) are also acceptable. If the gene expression data is input as an AnnData, you can also ...
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AssociationLine AssociationRelationship Asterisk AsymmetricKey AsymmetricKeyError AsymmetricKeyWarning AsynchronousMessage ATL ATLApplication ATLASPComponent ATLComponentWizard ATLControl ATLDialog ATLEvent ATLFile ATLObject ATLProperty ATLServer ATLWebService Attach AttachDocument AttachDynamicTemplate AttachStyleSheet at...
SCANPY: large-scale single-cell gene expression data analysis. Genome Biol. 2018;19(1):15. Article PubMed PubMed Central Google Scholar Yuan H, Yan M, Zhang G, Liu W, Deng C, Liao G, Xu L, Luo T, Yan H, Long Z, et al. CancerSEA: a cancer single-cell state atlas. Nucl ...
(http://comphealth.ucsf.edu/TCGA110CL). For each tumor type, we adjusted for primary tumor purity and compared the expression profiles of the primary tumor samples to the 932 cell line expression profiles in a correlation analysis. We included tumor subtype predictions for the nine tumor types...
The objective of this review is to survey the current progress in the field of cell-type identification, starting with the Human Cell Atlas project, which aims to sequence every cell in the human body, to molecular marker databases for individual cell types and other sources that address cell-...
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