Cell Cycle GeneGoebl, Mark GYochem, JohnJentsch, StefanMcgrath, John PVarshavsky, AlexanderByerst, Breck
Gene List of Human Cell Cycle Tox and Cancer Related Gene qPCR Array:人细胞周期检验和癌相关基因PCR阵列基因列表A,of,帮助,Gene,list,Human,Cell,Cycle,Tox,and 文档格式: .pdf 文档大小: 92.53K 文档页数: 3页 顶/踩数: 0/0 收藏人数:
3. Run correlation and random-forest feseR to narrow down the genelist.(使用机器学习算法缩小预测变量范围) 4. Generate RFmodels based on feseR-restricted genesets(产生随机森林模型) 5. Check accuracy in fetal vs adult cells that were not in the training set(检验模型的性能,并不是在训练集上,...
函数tl.score_genes_cell_cycle用给定S phase 和 G2M phase的两个基因集,计算打分,然后根据得分分配细胞phase, 其源代码在scanpy/tools/_score_genes.py 关于打分细节,见上一篇https://www.yuque.com/huangsh/lq16ea/zbvnce 参数设置: adata: AnnData 对象 s_geneS phase gene list g2m_geneG2M phase ...
no.cell.cycle = T, out.name = "gene.model") head(my.obj@gene.model) # 高变基因 # "ACTB" "ACTG1" "ACTR3" "AES" "AIF1" "ALDOA" # get html plot (optional) #make.gene.model(my.obj, my.out.put = "plot", # dispersion.limit = 1.5, ...
Cell-cycle gene list Macosko et al., 2015, Tirosh et al., 2016 N/A Contact for Reagent and Resource Sharing Further information and requests for reagents may be directed to, and will be fulfilled by, the Lead Contact, F.T. (tangfuchou@pku.edu.cn). Experimental Model and Subject Details...
3. Run correlation and random-forest feseR to narrow down the genelist.(使用机器学习算法缩小预测变量范围) 4. Generate RFmodels based on feseR-restricted genesets(产生随机森林模型) 5. Check accuracy in fetal vs adult cells that were not in the training ...
网络释义 1. 细胞周期特异性表达基因 心肌细胞特异性表达,ventricular... ... ) cell-specific expression 细胞特异性表达 )cell cycle gene细胞周期特异性表达基因... www.dictall.com|基于 1 个网页
# cancer marker CEACAM6, cell-cycle-related gene CCND2, and apoptosis-related gene BAX genes_to_check = c("CEACAM6","CCND2","BAX") # All on Dotplot p <- DotPlot(sce, features = genes_to_check,group.by = 'cancer') + coord_flip() ...
After quality control, the number of unique molecular identifiers (UMIs) mapping to each gene in each single cell were normalized for library size and log-transformed using scanpy’s default normalization parameters52. Next, a publicly available list of cell cycle genes55 was used in combination ...