For SpaGCN (v.1.2.2), we followed the authors’ tutorial notebook (https://github.com/jianhuupenn/SpaGCN/blob/master/tutorial/tutorial.ipynb), which demonstrated its analysis on sample no. 151673. We adapted the notebook for the 11 other samples, changing only the number of desired cluste...
An open-source implementation of the TESLA algorithm in Python can be downloaded from https://github.com/jianhuupenn/TESLA. The custom script used to overlay the spatial locations of the hypoxia signal and TSTR cells on the same histology image is available at GitHub (https://github.com/...
Eleanor B Golden - golden@biochem.dental.upenn.edu; Giovi Grasso- Knight - ggrassok@mailserver.aecom.yu.edu; Phoebe S Leboy - phoebe@biochem.dental.upenn.edu * Corresponding author Published: 03 February 2005 Cell Communication and Signaling 2005, 3:3 doi:10.1186/1478-811X-3-3 Received:...
Eleanor B Golden - golden@biochem.dental.upenn.edu; Giovi Grasso- Knight - ggrassok@mailserver.aecom.yu.edu; Phoebe S Leboy - phoebe@biochem.dental.upenn.edu * Corresponding author Published: 03 February 2005 Cell Communication and Signaling 2005, 3:3 doi:10.1186/1478-811X-3-3 Receiv...
Center, Basic Sciences Division, Seattle, WA 98109, USA and 3University of Pennsylvania School of Nursing, Philadelphia, PA 19104, USA Email: Brett K Kaiser* - bkaiser@fhcrc.org; Maxence V Nachury - nachury@stanford.edu; Bryan E Gardner - bryangar@nursing.upenn.edu; Peter K Jackson -...
immune cellsis not complete. We applied single-cellRNA sequencingto 284 samples from 196 COVID-19 patients and controls and created a comprehensive immune landscape with 1.46 million cells. The large dataset enabled us to identify that different peripheral immune subtype changes are associated with ...
Custom TaqMan Gene Expression assays Thermo-Fisher ID APU667U TaqMan Master Mix Applied Biosystems 4324018 PureLink Plasmid Maxiprep Kit Invitrogen Cat#20220831 Experimental models: cell lines Human: Raji ATCC Cat# CRL-7936 Human: 293T ATCC Cat# CRL-11268 Human: BCBL Yan Yuan/UPENN N/A Marmose...
Oncolink. University of Pennsylvania Cancer Center.http://cancer.med.upenn.edu. Other "Coping With Side Effects." National Cancer Institute. July 2, 2001.http://cancernet.nci.nih.gov/chemotherapy/chemoside.html. NCI/PDQ Patient Statement, "Hairy cell leukemia."National Cancer Institute, 2001....
and viral infection • Thymus and lymphocyte immunobiology • Transplantation immunology • Tumor immunity Special issues: Suggestions for special issue topics and guest editors can be sent to Michael Cancro, cancro@mail.med.upenn.edu Benefits to authors We also provide many author benefits, ...
snRNA-seq data from the cerebral cortex of mice after pentylenetetrazole (PTZ)-induced seizure and saline-treated controls was obtained from the Google Drive folder accompanying the original publication (https://github.com/wulabupenn/Hu_MolCell_2017). DE analysis was performed by comparing cells ...