MycoSNP: A Portable Workflow for Performing Whole-Genome Sequencing Analysis of Candida auris. Methods Mol Biol.2022; 2517:215-228. doi:10.1007/978-1-0716-2417-3_17 The nf-core framework for community-curated bioinformatics pipelines.
Pre-MycoSNP workflow: A first-pass workflow for quick answers Fungal taxonomic classification and Candida auris clade typing, using de novo assemblies Main MycoSNP workflow (default workflow): Reference-based SNP calling Tree building Identification of antifungal-resistance mutations...