Gene NameGene Symbol/AliasesFold ChangeGene Function Proliferation/Self-Renewal cyclin B1 Ccnb1 ↑ 2.4 G2/mitotic cyclin ubiquitin-conjugating enzyme E2C Ube2c, UBCH10 ↑ 2.1 ubiquitination, cell-cycle regulation cell division cycle 25 homolog C Cdc25c ↑ 2.1 phosphatase, regulates mitosis cyclin ...
Terminal deoxynucleotidyl transferase(TdT) is a DNA polymerase active during the process of immunoglobulin and T-cell receptor gene rearrangement early in a precursor B or T cell's life. Normally, only early B andT lymphoblastsmark for TdT. The staining pattern is nuclear. TdT is a sensitive ...
(mapkGsub), length) > 0 ios <- outs | ins ## translate the KEGG IDs into Gene Symbol if(require(org.Hs.eg.db)) { ioGeneID <- translateKEGGID2GeneID(names(ios)) nodesNames <- sapply(mget(ioGeneID, org.Hs.egSYMBOL, ifnotfound=NA), "[[",1) } else { nodesNames...
genes=as.vector(rt[,1]) entrezIDs <- mget(genes, org.Hs.egSYMBOL2EG, ifnotfound=NA) entrezIDs <- as.character(entrezIDs) rt=cbind(rt,entrezID=entrezIDs) colnames(rt)=c("symbol","entrezID") rt=rt[is.na(rt[,"entrezID"])==F,] gene=rt...
load(file='anno_DEG.Rdata')geneList=DEG$logFCnames(geneList)=DEG$symbolgeneList=sort(geneList,decreasing=T)#选择gmt文件(MigDB中的全部基因集)d='./MsigDB/symbols'gmts<-list.files(d,pattern='all')gmts### 第二:关于GSEA的理解library(GSEABase)# BiocManager::install('GSEABase')## 下面使用...