Fast and reliable prediction of noncoding RNAs. Proc. Natl. Acad. Sci. USA. 2005;102(7):2454–9. 28. Yao Z, Weinberg Z, Ruzzo WL. CMfinder-a covariance model based RNA motif finding algorithm. Bioinformatics. 2
variable errors, insensitivity to monotonic transformation of variables, and high predictive power. In this study, we implemented the PURF algorithm by extending the ensemble and tree modules in the Python scikit-learn package105and developed a lightweight Python package. The framework proposed by Li ...
L. Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics 2011; 12(1). 37. Francis RM. Pophelper: an R package and web app to analyse and visualize population structure. Mol Ecol Resour. 2017;17(1). 38. Zhang C, Dong SS, Xu JY, He WM, Yang TL...
bovis.51 On the other hand, VPM1002 is a recombinant BCG vaccine (BCGΔureC::hly) in which the urease C gene has been replaced by the coding gene (hly) of listeriolysin O from Listeria monocytogenes.47 Immuvac (MIP) is a vaccine based on heat-killed Mycobacterium indicus pranii.9 ...
The least absolute shrinkage and selection operator logistic regression model and support vector machine-recursive feature elimination algorithm were combined to screen potential biomarkers. The test datasets validated the expression levels of these biomarkers, and the area under the curve (AUC) was ...
This method is based on a four-step algorithm. Initially, the protein sequences are defined in terms of their properties, including size, hydrophobicity, relative abundance, α helix and β-strand forming propensities. The generated strings that vary in length are transformed into vectors of equal...
It might be because the injection of spores elicited a stronger non-specific immune reaction than oral immunization, such as lysozyme and complement system, which might also take part in the elimination of C. sinensis in mice [23]. However, the mechanism involved deserves further exploration. ...
A multi-epitope prophylactic/therapeutic vaccine targeting the pathogen's major structural and functional infective proteins (E, NS3, and NS5 proteins in this study) would be invaluable to achieve the current elimination goal. The present study was conducted with the directive to design a chimeric ...
(OTUs). The representative sequence for each OTU was screened for further annotation. For each representative sequence, the GreenGene Database (http://greengenes.lbl.gov/) [43] was used based on the RDP classifier (Version 2.2,http://sourceforge.net/projects/rdp-classifier) [44] algorithm to...
According to the World Health Organization reports, billions of people around the world are at risk for malaria disease and it is important to consider the preventive strategies for protecting the people that are living in high risk areas. One of the mai