The Cancer Genomics Hub (CGHub) is the online repository of the sequencing programs of the National Cancer Institute (NCI), including The Cancer Genomics Atlas (TCGA), the Cancer Cell Line Encyclopedia (CCLE) and the Therapeutically Applicable Research to Generate Effective Treatments (TARGET) projec...
The Cancer Genomics Hub (CGHub) is a central repository for the genomic information generated through three different programs at the National Cancer Institute (NCI) of the United States, namely, The Cancer Genome Atlas (TCGA), the Cancer Cell Line Encyclopedia (CCLE), and the Therapeutically App...
We thank The Cancer Genome Atlas (TCGA) project and members of the Cancer Genomics Hub (CGHub) for making all TCGA RNA-seq data publicly accessible. We thank the Genotype-Tissue Expression (GTEx) project for making all RNA-seq data publicly accessible. We thank Alexander Dobin, creator of th...
TCGA also maintains a data portal for distribution of data (see https://tcga-data.nci.nih.gov/tcga/), as well as funds the Cancer Genomics Hub for distribution of primary sequencing data (see https://cghub.ucsc.edu). After a significant number of PTCs completed the pipeline, the next ...
The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. Database (Oxford) 2014, bau093 (2014). Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). Article Google Scholar Raine, K. M. et al. Pcap-core....
The University of California, Santa Cruz, has now completed a first step in building this infrastructure, said UC Santa Cruz bioinformatics expert David Haussler. Haussler's team has established theCancerGenomics Hub (CGHub), a large-scale data repository and user portal for the National Cancer In...
The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. Database. 2014;2014:1–10. Article Google Scholar Wu X, Yin J, Deng Y, Zu Y. Whole-genome characterization of large-cell lung carcinoma: a comparative analysis based on the histological classification....
(GSCs) for similar characterization and excessive-throughput sequencing. Then, series-associated facts are deposited inside the DCC. The Genome Characterization facilities also post hint documents, sequences, and alignment mappings to NCI’s cancer Genomics Hub (CGHub) secure repository. The generated ...
TCGA breast cancer RNA-Seq data (bam files) and their related clinical data were obtained from the Cancer Genomics Hub (CGHub, https://cghub.ucsc.edu/) and TCGA Data Portal (https://tcga-data.nci.nih.gov/tcga/). The paired-end FASTQ files for each sample were extracted from bam files...
Haussler's team has established the Cancer Genomics Hub (CGHub), a large-scale data repository and user portal for the National Cancer Institute's cancer genome research programs. CGHub's initial "beta" release is providing cancer researchers with efficient access to a large and rapidly growing ...